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Name : secD (H16_A3115) Accession : YP_727558.1 Strain : Genome accession: NC_008313 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 3370871 - 3372742 bp Length : 1872 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGAATCGTTATCCGCTTTGGAAATACCTCGTGATCCTGGTGGCCCTGGCCATCGGCATCATCTATACCTTGCCGAATTT CTTCGGCGAGGCGCCTGCGGTGCAGGTGTCCTCGGGCAAGGCCACGGTCAAGGTCGACCTGTCGATGCAGAAGCAGGTCG AAGAGATCCTGGCACAGAACCAGCTGCAGCCTGACGGCGTCTTCTTTGATATTTCCGGCCAGTCCGGCTCGGTCAAGGCG CGCTTCCGCACCACCGACGAGCAGCTCAAGGCCAAGGACATCCTGTCGCGCACGCTCAACCCCGACGCGGCCGACCCCAC CTATGTGGTCGCGCTGAACCTGCTGTCGGGCTCGCCGCGCTGGCTGACCGCCATGCACGCGCTGCCGATGTACCTGGGCC TGGACTTGCGCGGCGGCGTGCACTTCCTGCTGCAGGTCGACATGAAGGGCGCGGTCGACAAGAAGCTCGACAGCCTGGGC GGCGACGCGCGCACCCTGCTGCGCGACAAGAGCATCCGCCACGGCGGCATCGACCGCGATGGCGAGCGCCTGACGGTGCG CTTCAACAACGCCGACGACGCCAACCGCGCGCGTCCGCTGCTGGCCGACAACCTGCGCGAAGTCGCCTTCGCCATGGACG GCAACAATATCGTCGGCACCTTCACCGAAGCCGCCCGCAAGGCCGTGCAGGATGCCGCGGTCAAGCAGAACATCACCACG CTGCACAACCGCGTCAACGAGCTTGGCGTGGCCGAGCCGGTGATCCAGCAGCAAGGCGCCGACCGCATCGTGGTGCAGCT GCCCGGCGTGCAGGACACCGCCAAGGCCAAGGACATCATCGGCCGCACCGCCACGCTCGAAGCCCGCCTGGTCGACAACG ACGCGCCGCGCAGCCCGCGCCCGGGCGACCCGATCCCGTTCGGCAGCGAGCTCTTCACGCAAGGCAACGGCGCCCCGGTG GTGCTGAAGAAGCAGGTCATCTTCACCGGCGACCGCATTGAAAGCGCCTCGGCCGGCTTCGACCAGAACCAGCAGCCTTC GGTCAACATCAAGCTCGACGCCCAGGGCGGACGCGTGCTGCGCGACGTCTCGCGCGAGAACCTGAAGAAGCCGATGGCGA TCGTGCTGTTCGAAAAGGGCAAGGGCGAAGTGCTGACGGTGGCGACGATCCAGTCCGAACTGGGCTCCAGCTTCCAGATC ACCGGCTCCTACTCCACCGAAGCCGCCAACGACCTGGCGCTGCTGCTGCGCGCCGGCTCGCTGGCCGCGCCGATGGAGAT CATCGAAGAGCGCACCATCGGCCCGTCGCTGGGCGCGGACAACATCCGGAAGGGTTTTGACTCGGTCGCCTACGGCTTTG CCGCCATCGGCGTGTTCATGATCCTGTACTACATGCTGTTCGGCGTGTTCTCGGTGGTGGCGCTGGGCGTGAACCTGCTG CTGCTGATCGCGGTGCTGTCGATGCTGCAGGCCACGCTGACGCTGCCGGGCATTGCCGCCATCGCGCTGGTGCTGGGCAT GGCCATCGACGCCAACGTGCTGATCAACGAGCGCATCCGCGAGGAACTGCGCGCGGGCGCGTCGCCGCAGATGGCGATCG CGGTCGGCTTCGACCGCGCCTGGGCCACCATTCTGGACTCCAACGTGACCACGCTGATCGCCGGCCTGGCACTGCTGGCC TTTGGTTCGGGCCCGGTGCGCGGCTTTGCCGTGGTGCACTGCCTGGGCATCCTGACCTCGATGTTCTCGGCGGTGTTCTT CAACCGCGGCCTGGTCAACCTCTGGTACGGCCGCAAGAAGAAGCTGCAGAGCGTGGCCATCGGCCAGATCTGGAAGCCGG GCAACACCACCGACACGCCGGTCGCCAAGTAA Protein sequence : MNRYPLWKYLVILVALAIGIIYTLPNFFGEAPAVQVSSGKATVKVDLSMQKQVEEILAQNQLQPDGVFFDISGQSGSVKA RFRTTDEQLKAKDILSRTLNPDAADPTYVVALNLLSGSPRWLTAMHALPMYLGLDLRGGVHFLLQVDMKGAVDKKLDSLG GDARTLLRDKSIRHGGIDRDGERLTVRFNNADDANRARPLLADNLREVAFAMDGNNIVGTFTEAARKAVQDAAVKQNITT LHNRVNELGVAEPVIQQQGADRIVVQLPGVQDTAKAKDIIGRTATLEARLVDNDAPRSPRPGDPIPFGSELFTQGNGAPV VLKKQVIFTGDRIESASAGFDQNQQPSVNIKLDAQGGRVLRDVSRENLKKPMAIVLFEKGKGEVLTVATIQSELGSSFQI TGSYSTEAANDLALLLRAGSLAAPMEIIEERTIGPSLGADNIRKGFDSVAYGFAAIGVFMILYYMLFGVFSVVALGVNLL LLIAVLSMLQATLTLPGIAAIALVLGMAIDANVLINERIREELRAGASPQMAIAVGFDRAWATILDSNVTTLIAGLALLA FGSGPVRGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKKKLQSVAIGQIWKPGNTTDTPVAK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 1e-94 | 43 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 1e-94 | 43 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 1e-94 | 43 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 1e-94 | 43 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 6e-95 | 43 |
