Gene Information

Name : sync_1968 (sync_1968)
Accession : YP_731171.1
Strain : Synechococcus sp. CC9311
Genome accession: NC_008319
Putative virulence/resistance : Virulence
Product : carbon dioxide concentrating mechanism protein ccmK
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4577
EC number : -
Position : 1751931 - 1752242 bp
Length : 312 bp
Strand : -
Note : identified by match to protein family HMM PF00936

DNA sequence : 
ATGGCTAACGAAACCATGGGTATCGCTCTCGGCATGATCGAGACACGCGGCCTGGTCCCAGCGATCGAAGCAGCTGATGC
AATGACCAAGGCTGCTGAAGTGCGCCTGATTGGTCGTGAATTCGTCGGCGGTGGCTACGTCACAGTTTTGGTCCGTGGCG
AAACAGGTGCTGTGAACGCTGCAGTGCGTGCAGGTGCAGATGCTTGCGAACGTGTCGGCGACGGCCTCGTCGCGGCGCAC
ATCATTGCTCGCCCTCATCGCGAAGTTGAGCCAGCACTCGGCAACGGCAATTTCCTCGGACAAAAGGACTGA

Protein sequence : 
MANETMGIALGMIETRGLVPAIEAADAMTKAAEVRLIGREFVGGGYVTVLVRGETGAVNAAVRAGADACERVGDGLVAAH
IIARPHREVEPALGNGNFLGQKD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 2e-11 60
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 4e-12 54
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 2e-11 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sync_1968 YP_731171.1 carbon dioxide concentrating mechanism protein ccmK VFG1596 Protein 7e-12 60
sync_1968 YP_731171.1 carbon dioxide concentrating mechanism protein ccmK VFG1597 Protein 2e-12 54
sync_1968 YP_731171.1 carbon dioxide concentrating mechanism protein ccmK VFG1598 Protein 9e-12 52