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Name : secD (Mlg_1218) Accession : YP_742057.1 Strain : Alkalilimnicola ehrlichii MLHE-1 Genome accession: NC_008340 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1419252 - 1421117 bp Length : 1866 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGAACCGCTACCCCCTCTGGAAATACCTGATACTCATCGTGGCGATCAGCCTGGGCGCGCTCTACGCGTTGCCCAATCT CTTCGGTGAGGACCCGACGCTGCAGATCTCCACAGCGGAAGGGGATCCCCCTGACCAGGAGACGCAGCAGTCGTTGCTGC GCTTCCTGGAGGAGCAGGGTGTCCCGGCCATCGGTGCGGAGACCCGTGAGGGTCAATACCTGATCCGCTTCGACAGCGTG GACCACCAGATGGACGCGGCGGACCTGGTCTCCGCCAAGCTTGGCCGCGGGTACACGGCGGCCATGACCCTGACACCGAG GACACCGGCCTGGCTGCGGGCCCTAGGGGCCGAGCCGATGTACCTGGGCCTTGACCTGCGCGGCGGCGTGCACTTCCTGC TGGAGGTGGATGTCAATGCCCTCAGGGAACAGACGGTCGAGCGTCACGTCAACGACTTCCGCACCCTGCTGCGGCAGGGC CGCATCCGCTACGGTCAGGTGGAGCCCTACGAGGACCTGGCGGTGCGGGTCTCCTTCCGGGAGGCGCCGGCACGGGACGA GGCGTTGCGGTTGCTGCAGGAGGACTTCGGCGATCTGGAGTTCGACCGGGACGAGGCCGACGGCAACTATTACCTGATCG CTCGGATCACCCAGGACGACCTGGATGAGATCGTTCAGTTCTCGGTCAACCAGAACATCACCACCCTGCGCAACCGGGTC GATGAGCTGGGCGTGGCCGAGCCGGTGATCCAGCGTCAGGGTGCCGAGCGCATTGTTGTGCAGTTGCCCGGGGTACAGGA TCCGGCCCGGGCCAAGGAGATCCTCGGTGCCACCGCGACCCTGGAATTCCGCTTGGTGGATATGGAGCGCTATCCCTTCA CCGGGGATCCCGAGGCGCCACGCCTGCCACCCGCGGCGGAGCTGTTCCAGGAGCGCGACGGCAACTACGTGGTGCTGCAA CGGGATGTGATGATGACCGGCGACCGCATCGTTCATGCGGCGTCGGGGATCGACCAGGAGACGGGCGGTCCCCAGGTCAA CATCCGGCTCTCCGGCGCAGCCGGACGGCAGTTCAACCGCATCACCCGAGAGCACGTGGGCGATCTGATGGCGGTGGTCT TCATCGAGCGCCAGTCGGAGATGGTGCTGGTGAACGACGAGCCGCAGCGTGAGGTCACCGAGGTGCGCGAGGTGATCAGT GTCGCCAATATCCGCGAGCCCCTGGGGGCCAGCTTCCGGATCACCGGGCTGGACAGCACCCAGGAGGCGCGCAACCTGGC GCTGCTGTTGCGTGCCGGCGCCCTGGCCGCGCCCATCGATATCGTCGAGGAGCGCACCATCGGCCCGAGCCTGGGCGCCG AGAACGTACGCCAGGGCTTCCTGGCGGTGGTCATCGGCTTCGCCCTGGTGGTGGTCTTCATGGCCTTCTACTACCGGGTC TTTGGGCTGGTGGCCAACCTGGCGCTGATCACCAACCTGGTGCTTATCGTCGCGGTCCTGTCGCTGCTGCAGGCCACCCT GACCCTGCCGGGTATCGCCGGGATAGTGCTCACGGTGGGTATGGCGGTGGACGCCAACGTTCTGATCTTCCAGCGAATAC GCGAGGAGTTGCACGCCGGATCCAGTATCCAGCGGGCCATCGACCAGGGCTACGGCAAGGCCCTGTCCACCATCGCTGAC GCCAATGTGACCACGCTGATCGCCGCGGTGGTGCTGTTCGTGTTCGGCACCGGGCCGGTGCAGGGGTTCGCAGTCACCCT GTCCATCGGTCTGGTGACCTCCATGTTCACGGCCATCCTGGGCACCCGCGCGGTCATCAACCTCATCTACGGCGGCAACA AGCGCGTCGCCGAGCTCAAGATCTGA Protein sequence : MNRYPLWKYLILIVAISLGALYALPNLFGEDPTLQISTAEGDPPDQETQQSLLRFLEEQGVPAIGAETREGQYLIRFDSV DHQMDAADLVSAKLGRGYTAAMTLTPRTPAWLRALGAEPMYLGLDLRGGVHFLLEVDVNALREQTVERHVNDFRTLLRQG RIRYGQVEPYEDLAVRVSFREAPARDEALRLLQEDFGDLEFDRDEADGNYYLIARITQDDLDEIVQFSVNQNITTLRNRV DELGVAEPVIQRQGAERIVVQLPGVQDPARAKEILGATATLEFRLVDMERYPFTGDPEAPRLPPAAELFQERDGNYVVLQ RDVMMTGDRIVHAASGIDQETGGPQVNIRLSGAAGRQFNRITREHVGDLMAVVFIERQSEMVLVNDEPQREVTEVREVIS VANIREPLGASFRITGLDSTQEARNLALLLRAGALAAPIDIVEERTIGPSLGAENVRQGFLAVVIGFALVVVFMAFYYRV FGLVANLALITNLVLIVAVLSLLQATLTLPGIAGIVLTVGMAVDANVLIFQRIREELHAGSSIQRAIDQGYGKALSTIAD ANVTTLIAAVVLFVFGTGPVQGFAVTLSIGLVTSMFTAILGTRAVINLIYGGNKRVAELKI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 3e-115 | 46 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 2e-115 | 46 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 2e-115 | 46 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 2e-115 | 46 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 2e-115 | 46 |
