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Name : secD (Neut_1433) Accession : YP_747644.1 Strain : Nitrosomonas eutropha C91 Genome accession: NC_008344 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1513803 - 1515650 bp Length : 1848 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGAACCGCTACCCCCTCTGGAAATATATCGTCATCGCTGTTTCAATCCTGCTTGGACTGCTGTACACCCTGCCTAATTT TTTTGGTGAATCCCCCGCTGTTCAGATTTCACCACTACGAGCTGACGTACGGACCGATACAGCACTTTTGCAACGTTTGG AACAAGTCCTTAACCAGCAAAATCTTCCGTATAACGGAACAATACTGGAAGCAACCGGGATCAAAATCCGGTTTGCCGAT ACAGATACTCAGATCAAGGCGAAAGATATTCTAAGTTCCGAAGTTGGTAGCGATTATGTTGTTGCACTAAACCTGCTGCC CAACTCCCCGCAATGGATGCGTCACATTGGTGCTTTGCCCATGTATCTGGGTCTGGATCTACGCGGCGGAGTTCATTTTA TGTTGCAGGTGGATATGGCAGGTGCGCTCACAAAATCCCTCGATCGTTTCAGCGCTGATCTGCGCAGTACATTGCGTGAG CAAAGGATCCCTTCTGCCGGTATTGAGCGGGATCGGTCAAAAATTATAATCAGATTCCGCGATGAGCAAGCACGGGAAAA AGCAATTACGGAACTTGGAAAAGCATTTGAAGATCTCGCTTTTCAATCAGAAGAGGTTGGCGGAGAAGCACGTCTGACAA TCTCCATCAAGCCGGAAGCACTAGTGCGTATGCAAAATACTGCCGTCCAGCGCAATATCACCACGCTGCGCAACCGAGTC AACGAGCTGGGTGTGGCAGAACCGATTATTCAGCAGGCAGGGGCCGATCGGGTAATCGTGCAGTTACCGGGTGTACAGGA TACTGCCAAGGCGAAGGATATTCTGGGCAGAACCGCCACGCTGGAAGTACGCATGGTCGATGAAGAGGGTGATATTGATG CCGCCTTGCGCGGATCAGTTCCTCCTGGCACCGAATTGTTCACCGAGCGCGGGGGTGGCCCACTCTTGGTCAAAAAACAG ATCCTGCTTACCGGTGACCGTATCACGGACGCCCAACCCGGATTTGATCAGGATCACCAACCTGCTGTCCATTTGACACT AGACAACAATGGTTCACGAATTTTCAAGCAGCTAACACGTAATAACGTAGGTAAGCGCATGGCCATTCTGCTGGTGGAAA AAAATCTGACCGAGGTGGTTACTGCGCCGGTTATTCGCGAAGAAATCGGTGGCGGGCGCGTACAGATCAGCGGAAAAATG AGCAGTATTGAAGCACGTGATGTTGCTCTGCTGTTGCGTGCGGGTGCGCTGGCTGCCCCCATGGAAATCGTCGAGGAGCG TACGATAGGACCAAGCCTGGGAGCTGAAAATATCTCCAAAGGCTTCAATTCGACTCTGTTTGGTTTCCTGGCGGTAGCCA CATTCATCATGGCTTATTACTCGGCCATTGGTGTCATCTCTGTTGTGGCACTCGCCATCAACCTGCTGTTTCTCATTGGA TTGCTCTCAATCTTGCAAGCGACATTAACACTCCCCGGAATGGCCGGAATGGCGCTGACTGTCGGGATGGCAATTGACGC AAACGTACTGATCAATGAACGTATCCGCGATGAAATCCGCCATGGTGCTTCACCACAGGCAGCCATCCATGCCGGGTATG AGCGTGCATGGGATGCGATTATCGATACCAACCTAACCACGTTACTGGCTGGCCTTGGCTTGATGATATTCGGTAGCGGG CCGATAAAAGGTTTCGCTGTCGTACTATGTCTGGGAATTCTGACCACACTCTTCAGTGCAGTCACCGTTTCGCGCGCAAT GGTTAATCTATTGTACGGAAACCGCAAACTTGCGCGTGTCCCGATCGGAACCATCAAAATATCGAAGAAAAGTAGCAACA AACATTAA Protein sequence : MNRYPLWKYIVIAVSILLGLLYTLPNFFGESPAVQISPLRADVRTDTALLQRLEQVLNQQNLPYNGTILEATGIKIRFAD TDTQIKAKDILSSEVGSDYVVALNLLPNSPQWMRHIGALPMYLGLDLRGGVHFMLQVDMAGALTKSLDRFSADLRSTLRE QRIPSAGIERDRSKIIIRFRDEQAREKAITELGKAFEDLAFQSEEVGGEARLTISIKPEALVRMQNTAVQRNITTLRNRV NELGVAEPIIQQAGADRVIVQLPGVQDTAKAKDILGRTATLEVRMVDEEGDIDAALRGSVPPGTELFTERGGGPLLVKKQ ILLTGDRITDAQPGFDQDHQPAVHLTLDNNGSRIFKQLTRNNVGKRMAILLVEKNLTEVVTAPVIREEIGGGRVQISGKM SSIEARDVALLLRAGALAAPMEIVEERTIGPSLGAENISKGFNSTLFGFLAVATFIMAYYSAIGVISVVALAINLLFLIG LLSILQATLTLPGMAGMALTVGMAIDANVLINERIRDEIRHGASPQAAIHAGYERAWDAIIDTNLTTLLAGLGLMIFGSG PIKGFAVVLCLGILTTLFSAVTVSRAMVNLLYGNRKLARVPIGTIKISKKSSNKH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 4e-102 | 42 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 9e-102 | 42 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 5e-102 | 42 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 4e-102 | 42 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 4e-102 | 42 |
