Gene Information

Name : Sfri_2396 (Sfri_2396)
Accession : YP_751079.1
Strain : Shewanella frigidimarina NCIMB 400
Genome accession: NC_008345
Putative virulence/resistance : Resistance
Product : lipoprotein releasing system, ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2857648 - 2858367 bp
Length : 720 bp
Strand : -
Note : KEGG: son:SO2258 lipoprotein releasing system ATP-binding protein LolD; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGAGCCAGACACAACAAGCGTTATTACAAGTTCAACACGTCAGTAAGCATTATCATGACGGTGAAGTGACCACTCAGGT
ATTATCGGGTGTTGATTTAACCGTGTATAAGGGTGAGCAGCTAGCCATTGTAGGCAGTTCTGGATCGGGTAAAAGTACGC
TTTTACATATCATGGGTACCTTAGACACGCCAACGTCTGGAACCGTGTTATTAGACGGCGAAGATTTATATCAATTGTCT
AGTGCGCGTCAGGCACAAATACGTAATCAGGATTTGGGCTTTATCTATCAATTTCATCATTTATTGCCAGAGTTTACCGC
GATTGAAAACGTGGCGATGCCAGCATTTATTCAAGGCAGAGATAAAACGCAAGCCTTGGTAGACGCAAAAAATTTACTTG
AACGTGTGGGGTTAGGTCATCGTTTGCAGCATATTCCGGCGCAATTGTCGGGTGGTGAGCGTCAACGTGTGGCGATTGCC
AGAGCACTTATCAACAAACCAAAGTTAGTATTAGCCGATGAACCTACAGGTAATTTGGATGCCAGCAGTGGTGATAATGT
TTATGCGATGATCCGCGAGTTAGCGCAGCAATTTGGTACGGCGTTCGTGGTGGTTACTCATGATCATAAATTAGCAGCCA
AGATGGATCGTCAATTGACAATGAAAGACGGCATTTTGCAAGTTGTTGCTGCAACATCTCCAACAGGGCTAGCCGAATGA

Protein sequence : 
MSQTQQALLQVQHVSKHYHDGEVTTQVLSGVDLTVYKGEQLAIVGSSGSGKSTLLHIMGTLDTPTSGTVLLDGEDLYQLS
SARQAQIRNQDLGFIYQFHHLLPEFTAIENVAMPAFIQGRDKTQALVDAKNLLERVGLGHRLQHIPAQLSGGERQRVAIA
RALINKPKLVLADEPTGNLDASSGDNVYAMIRELAQQFGTAFVVVTHDHKLAAKMDRQLTMKDGILQVVAATSPTGLAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sfri_2396 YP_751079.1 lipoprotein releasing system, ATP-binding protein CP001581.1.gene798.p Protein 5e-42 42
Sfri_2396 YP_751079.1 lipoprotein releasing system, ATP-binding protein NC_008702.1.4606598. Protein 9e-32 42
Sfri_2396 YP_751079.1 lipoprotein releasing system, ATP-binding protein NC_012469.1.7686878. Protein 9e-40 41