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Name : secD (Sfri_2700) Accession : YP_751379.1 Strain : Shewanella frigidimarina NCIMB 400 Genome accession: NC_008345 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 3244182 - 3246032 bp Length : 1851 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : GTGTTAAATAAATACCCAATGTGGAAAAACATCATGGTGATGCTTGTCATTGCCATTGGTAGTTTTTATGCAATTCCAAA TTTGTTTGGTGAAGATCATGCAGTGCAGATTGTCGCGACTCGCGGCGCAGAAGTTACTGCATCGACACAAACGACTGTGG TTGATTTATTAGATAGTCAGGGTATTGCGGTAAAGCGTGCCGAGCTAGAAAATGGTCAGTTATTAGTCCGAGTGCAAAAT CCTGAGCAACAGTTAGTCGCTAAAGAAGCTATCGCTGAACTGCTTGGCCAGAAATATACCGTTGCGCTAAACTTAGCTCC GGCAACCCCTGAATGGCTTGAAGCTGTTGGTGGGTCACCGATGAAATTAGGTTTAGATTTACGTGGTGGTGTTCACTTCC TAATGGAAGTGGATATGGGCGAAGCTATTCGTAAAATGGAAGAAGCTAAGATAGCTGATTTCCGTAGCCAGCTTCGTGAA GAGAAAATTCGTTATGCTGGTATTCGTAAAACCCCTAAAGGGATTGCGATTAAGTTTCGAGATGCTGAAACGGTTGACCA AGCAGAGACTTATTTAAAAACCCGCAGCAATGACATGACCTATACCGATGCGAGTAGCGGTAATGAGTTTATGCTTCTTG CCACCATGAGTGATGCTTACCTTAAGCAAATTAAGGAAGAAGCACTGCAGCAAAACATTACCACTATTCGTAACCGTGTT AACGAGCTGGGTGTTGCTGAGCCAGTAGTACAACGTCAAGGCGCCGAGCGCATTATTGTTGAACTGCCAGGTGTACAAGA CACTGCTCGAGCAAAAGAAATTTTAGGTGCTACGGCATCAATTGAATTTCGTATGGTTGATGATAAGGCTGACGTAAGCG CAGCTGCAAATGGTCGTGTTCCTGCAGGCGCAGAAGTGTACCAACGCCGTGAAGGCGGGATTGCAGTATTGAAAAAAGAA GTGATGCTAACGGGTGATCATATCACTGGTGCACAACCTACTTTTGATGAATACAGTCGTCCACAGGTAGCGATTAATCT TGACGCAAAAGGCGGCTCGATTTTCTCTAACGTGACCAAAGACAATATCGGTAAACCAATGGCAACATTATTTATCGAAT ATAAAGACAGTGGTACACGTAATCCTGATGGCACAGTGAAAATGACTCGTATTGAAGAGGTTATTTCAGTTGCGACGATT CAGGCTCGTTTAGGCCGTAATTTTGTGATTACCGGTCTTGAGCACACTGAAGCACAAAGCCTAGCGTTATTATTACGTGC AGGTGCGTTGATTGCGCCAGTGACCATTGTGGAAGAAAGAACTATTGGCCCAAGCCTAGGTGCTGAAAACATCCAAAACG GTGTTCAAGCGATGATTTGGGGCATGGTTGTTGTTCTTGTATTTATGATGGTTTATTACCGTGCATTTGGTTTTATTGCC AACCTTGCATTGCTGGCAAACCTAATTATGGTTGTTGGTGTGATGTCTATGATCCCAGGTGCGGTATTAACCTTACCAGG TATTGCGGGCATGGTATTAACGGTGGGCATGGCGGTTGACGGTAACGTACTTATTTTTGAACGTATCCGTGAAGAACTTC TTGGCGGCCGCAGCGTGCAACAAGCTATCCATGAAGGTTATGGTAATGCTTTTTCAACCATTGCAGATGCTAACATCACT ACCTTTATGACAGCGTTAATCTTGTTTGCTGTCGGTACCGGTGCGGTGAAAGGCTTTGCTGTTACCTTAATGATAGGTAT CGCGACTTCGATGTTTACAGCCATTGTTGGCACACGCTCAATCGTGAATGCGGTTTGGGGTGGTAAGCGCGTTAAGTCAT TGTCTATCTAA Protein sequence : MLNKYPMWKNIMVMLVIAIGSFYAIPNLFGEDHAVQIVATRGAEVTASTQTTVVDLLDSQGIAVKRAELENGQLLVRVQN PEQQLVAKEAIAELLGQKYTVALNLAPATPEWLEAVGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKIADFRSQLRE EKIRYAGIRKTPKGIAIKFRDAETVDQAETYLKTRSNDMTYTDASSGNEFMLLATMSDAYLKQIKEEALQQNITTIRNRV NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFRMVDDKADVSAAANGRVPAGAEVYQRREGGIAVLKKE VMLTGDHITGAQPTFDEYSRPQVAINLDAKGGSIFSNVTKDNIGKPMATLFIEYKDSGTRNPDGTVKMTRIEEVISVATI QARLGRNFVITGLEHTEAQSLALLLRAGALIAPVTIVEERTIGPSLGAENIQNGVQAMIWGMVVVLVFMMVYYRAFGFIA NLALLANLIMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIFERIREELLGGRSVQQAIHEGYGNAFSTIADANIT TFMTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRSIVNAVWGGKRVKSLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 3e-118 | 48 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 3e-118 | 48 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 3e-118 | 48 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 3e-118 | 48 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 9e-119 | 48 |
