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Name : ccmF (HNE_1310) Accession : YP_760028.1 Strain : Hyphomonas neptunium ATCC 15444 Genome accession: NC_008358 Putative virulence/resistance : Unknown Product : cytochrome c-type biogenesis protein CcmF Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG1138 EC number : - Position : 1341985 - 1343892 bp Length : 1908 bp Strand : + Note : identified by similarity to SP:P33927; match to protein family HMM PF01578 DNA sequence : ATGATCGAACTCGGCCATTTTGCCGCCTTCCTCGCACTGGGGCTGGCTTTGGCGCAGACGGTGCTGGGGCTGAAGGGCGA GCGGCGCCTGGCGGGGCTGGCGGCTGTGGCGGGCTTTGGCGTGATGGCGCTGGCGTTCCTCACCATCGTTTATGCCTTCA TGCGCTCGGATTTCTCGGTCGCTCTGGTGGCCAACAACTCCCACACGCTCAAACCCATGGTCTACAAGATCGCCGGGGCG TGGGGGAACCATGAAGGCTCAATGGCGCTCTGGTGTCTCGTGACGCTCGGCTTTGGCGCGATTGCGGCGGCGACGATGCG GACCGGGCGCGAGACGTTTGAGGCGCGGGCGCTGGGCGTGCAGGGGATGCTGGCGGTGGGGTCGCTGGCTTACCTGTTGT TTGCGTCTTCGCCGTTCCTGCGGCTTGATCCGGCGCCGTTTCAGGGGGCGGGGCTGAACCCTCTGTTGCAGGACCCGGCG CTCGCGATCCATCCGCCGATGCTTTATCTTGGCTATGTCGGATACTCCTTTGTCTTTGCGCTGGCGGCCGCTGGCCTGAT GGAGGGGCGGATTGACCGGGTTTGGGCGAAGGAGGCGCGGATATGGTCTCTGGCGGCGTTTGCGCCGCTCACCCTTGGCA TCGCGCTGGGCTCTTACTGGGCTTATTACGAGCTTGGCTGGGGCGGCTGGTGGTTCTGGGACCCGGTGGAGAATGCCTCG CTGATGCCGTGGCTGATCGGGGCGGCGCTGCTGCATTCGGTGATCGTCACGGAGAAGCGCGAGAGCTTTGCGGCCTGGAC GGCACTGCTGGCGGTGCTCTCATTCCTGTTCTCGATATTGGGCGCGTTCCTTGTGCGCTCGGGCGTGCTGACGTCTGTGC ATGCGTTTGCGGTGGACCCGGAGCGGGGGACGCTGCTGCTGCTGGGACTGCTGGGCTATGGCGGGTTTGCGCTGGGGCTG TTTGCGCTTCGGGCGCCGTCGCTGATGGGGGGCAAGCCCTGGACGCTGCTCAGCCGCGAAGGCGCGCTGATGGCGAATAA TGTGGTGCTGATTGTTGCCACGCTGACGGTGTTGCTGGGCACGCTGTTTCCTTTGATTGCCGAGGCGTTCGGGCGGACGA TTTCTGTGGGCGAGCCCTATTTCAATCTGACCTTTGTGCCGATCCTGGTGCTGGCGCTGATCATTCTGCCGGTGGCGCAG GCCTGGGCGTGGGGCAAGGCGGACCTCAAATCCTGGCGGCGCTGGGCGATGGGCGGGGCGGCGTTGACGGCGGTGTTCAT GCTGCTGGGCATCGGGCCGCTGGACATTCCGCTGGGCGCGGCGTTCGGGCTGGCGCTCGGTTTCTGGCTGGTGTTTGGCG CCGTCTGGGAGATGAAGCGGCGGGCGATCAATATCCGGCGCATCTTCAAGATGCCGGCGCGCGTGTGGGCGATGACGCTC GCGCATGCCGGGCTGGGGCTGTTCGTGATCGGCGCTGTGCTGGAGACGAGCGGGCGGTATGAGGCGACGCTGGCGCTGCC CGAGGGCGGCTCTGGCACCGTAGCGGGCTGGGCGATCACGCTGGACGAGGTGCGCGCGATCGAGGGGCCGAACTGGTATG CCGACAAGGCCGTGCTGACCGCGCGCAAGGGCAGCGCCAGCGCGGAACTTCTGCCGATGAAGCGCTTCTATCCGGCCGCG ATGATGCCGACGACCGAGACAGCGATCCACAAGACCGGCGCGGGCGATCTCTATGTTGCCCTTGGCGAGCAGCGCGAGAT TGACGGCGAGGCGCGCTGGGTGTTCCGCGTCTACTACAATCCGATGGTGGATGTGCTGTATCTGGGCGTCGTGCTGATCG GGCTTGGCGGGCTGATCGGGATGTGGCCGGCAGGGCGGCGGCTCAAGCCCGCGGCAGACGAAGCGTAG Protein sequence : MIELGHFAAFLALGLALAQTVLGLKGERRLAGLAAVAGFGVMALAFLTIVYAFMRSDFSVALVANNSHTLKPMVYKIAGA WGNHEGSMALWCLVTLGFGAIAAATMRTGRETFEARALGVQGMLAVGSLAYLLFASSPFLRLDPAPFQGAGLNPLLQDPA LAIHPPMLYLGYVGYSFVFALAAAGLMEGRIDRVWAKEARIWSLAAFAPLTLGIALGSYWAYYELGWGGWWFWDPVENAS LMPWLIGAALLHSVIVTEKRESFAAWTALLAVLSFLFSILGAFLVRSGVLTSVHAFAVDPERGTLLLLGLLGYGGFALGL FALRAPSLMGGKPWTLLSREGALMANNVVLIVATLTVLLGTLFPLIAEAFGRTISVGEPYFNLTFVPILVLALIILPVAQ AWAWGKADLKSWRRWAMGGAALTAVFMLLGIGPLDIPLGAAFGLALGFWLVFGAVWEMKRRAINIRRIFKMPARVWAMTL AHAGLGLFVIGAVLETSGRYEATLALPEGGSGTVAGWAITLDEVRAIEGPNWYADKAVLTARKGSASAELLPMKRFYPAA MMPTTETAIHKTGAGDLYVALGEQREIDGEARWVFRVYYNPMVDVLYLGVVLIGLGGLIGMWPAGRRLKPAADEA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ccmF | AAN62106.1 | putative cytochrome C-type biogenesis protein CcmF | Not tested | PAGI-2(C) | Protein | 1e-76 | 46 |
| ccmF | YP_217241.1 | cytochrome c-type biogenesis protein | Not tested | SPI-12 | Protein | 7e-77 | 45 |
