|
Name : fiuI (PA14_06180) Accession : YP_788645.1 Strain : Pseudomonas aeruginosa UCBPP-PA14 Genome accession: NC_008463 Putative virulence/resistance : Virulence Product : RNA polymerase sigma factor Function : - COG functional category : K : Transcription COG ID : COG1595 EC number : - Position : 546308 - 546826 bp Length : 519 bp Strand : - Note : Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate DNA sequence : GTGTCGGCGGGTGACGTCAGCAACAGCGAATTCGTGGGTAGCCTGTACCGGGACCACCGCGGCTGGCTGCTTGCCTGGCT GAACCGCAACCTCGGCTGCCGCCAGCGCGCCGAAGACCTCAGCCAGGACACCTTCGTTCGCCTCCTCGGCCGCCCGGAGC TGCCCGGCCTGCGCGAACCGCGCGCGTTCCTGGCGAAGGTGGCGCGCGGCCTGATGATCGACCACTTCCGCCGCGCCGCC CTTGAGCAGGCCTATCTCGCCGAACTGGCGCTGGTTCCGGAAGCGGAGCAGCCTTCGGCCGAAGAGCAGTACCTGATTCT CGAGGACCTCCGCGAGATCGATCGCCTGCTTGGCACGCTGTCGCTGAAGGCGCGCAGCGCGTTTCTCTATAGCCGCCTGG ACGGCATGCCCCACGCGGAGATCGCCGAGCGTCTCGGAGTCTCGGTGCCGCGCGTGCGCCAATACCTGGCCCAGGGCCTG CGCCAGTGCTACATCGCCCTCTACGGAGAGCCCCGGTGA Protein sequence : MSAGDVSNSEFVGSLYRDHRGWLLAWLNRNLGCRQRAEDLSQDTFVRLLGRPELPGLREPRAFLAKVARGLMIDHFRRAA LEQAYLAELALVPEAEQPSAEEQYLILEDLREIDRLLGTLSLKARSAFLYSRLDGMPHAEIAERLGVSVPRVRQYLAQGL RQCYIALYGEPR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAL08458.1 | FecI | Virulence | SRL | Protein | 4e-22 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| fiuI | YP_788645.1 | RNA polymerase sigma factor | VFG1049 | Protein | 2e-22 | 48 |
