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Name : rpoB (BCc_019) Accession : YP_802597.1 Strain : Buchnera aphidicola BCc Genome accession: NC_008513 Putative virulence/resistance : Unknown Product : RNA polymerase, b subunit Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 24138 - 28169 bp Length : 4032 bp Strand : - Note : COG_category K;COG_number COG0085; RpoB DNA sequence : ATGATTTATTCTTATACTGAAAAAAAACGTATTCGTGAAAATTTTGGAAAACAACCAAAAATTTTAGATATTCCTTACTT ATTATCTATTCAAATAGATTCATTTAAAAAATTTATTGAACCAAAAAAAAACAATTATCAAGGATTAGAATCTGCTTTTC AATCAATTTTTCCTATACGTAGTTATAACGGATGTGCTGAACTACAATATGTATCATATACATTAGGAAAAAAATTATTT GATATGTATGAATCAAAAACTAGAGGAACTACATATTCTGTTCCATTAAGAGTAAAATTACAACTAATTATTTATGAAAA AGATTCAAAAAATACAAACGTAAAACACATTAAAGAACAAGAAGTATATATGGGTGAATTACCATTAATGACACATAATG GTACATTTATTATTAATGGTACTGAAAGAGTCGTAGTATCACAATTACATAGAAGTCCGGGTGTTTTTTTTGATAGTGAC AAAGGAAAAACACATTCTTCAGGAAAAATATTATACAACGCAAGAATTATTCCTTATCGAGGATCTTGGCTAGATGTTGA ATTTGATCCTAAAGATCATTTATTTATACGAATAGATCGTCGTAGAAAAATACCAGCTACTGTATTATTACATGCTTTAA ATTTTAGTACAGAAAAAATTTTAAAAATATTTTTTAAACATGATATTTTTTATATTAAAAATAAAAATATTTATATGTAT TTAATTCCTAAACGATTAAAAGGAGAAATCATTCCATTTGAAATTATAAAAAACAAAAAAAGATATATAAAAAAAGGAGA AAGAATAACAACAGAACATATAAAAAAACTAAAGAAAAAAAAAATCAAAACAATTCAAATTCCTGAAGAATATTTATATG GAAAAACTATAAGTAAAAATTATTACCATCCAAAAACAAAAGAAATATTAATAAAATCAAATACAACATTAACACAAGAT GAATTTAATAAAATTAAAAATTTTAATAACAAAAAATTTTATGTATTATTTACTAATAATATTGATAACGGAGCGTATAT TTCAGAAACCTTAAAAATTGATACAACTAAAGATCGATTAACAGCATTAATTGAAATATATAAAATTATGCGACCAGGAG AACCACCTACTAAAGAAGCCGCAGAAAATTTATTTAATAATCTTTTTTTTTCTCAGGAAAGATATGATCTTTCTCCTGTT GGACGAATGAAATTTAATAAATCTCTTAAAAGAAAAGAAAAAAAAGGATCAGGAATATTAAATAAAGAAGATATTATAGA TGTAATTAAAAAATTAATTAATATTAAAAATGGAAAAGGAGAAATTGATGATATTGATCACTTAAGTAATAGAAGAGTAA GATCAGTTGGGGAAATGGTTGAAAATCAATTTAGAATTGGATTAGTTAGGGTAGAAAGAGCTGTACGTGAAAGACTATCT CTGAGTGATTTAGACACACTAATGCCTCAAGATATTATTAATGCTAAACCCATTTCTTCTGCTATAAAAGAATTTTTTGG ATCTAGTCAATTATCTCAATTTATGGATCAAAACAATCCATTAGCAGAAATTACACATAAACGTAGAATTTCTGCATTAG GAATAGGAGGATTAACTAGAGAACGAGCAGGTTTTGAAGTACGAGATGTGCATCCTACACATTATGGTAGAGTATGTCCA GTAGAAACACCAGAAGGACCAAATATTGGTTTAATTAATTCTTTATCTATATATGCGAGAACAAATCAGTATGGTTTTTT AGAAACTCCATATAGAAAAGTAAAAAATGGTACAGTCACAACAAAAATTAAATATTTATCAGCTATTGAAGAAGGTAATT ATATTATTGCTCAAGCTAATACTAAAATTAATAAATTTGGAAAATTTTATAAAAAATTTGTTACATGTAGATATAATGGA GAATTTGGTTTATTTAAAAATAAAAAAGTAAATTATATGGATATATCGACACAACAAATCGTTTCAGTAGGAGCATCTTT AATACCATTTTTAGAACATGATGATGCAAATAGAGCATTAATGGGTGCAAATATGCAAAGACAAGCAGTTCCTACAATAA AATCAGAAAAACCATTAGTAGGTACAGGAATGGAAAGATCTGTAGCTATTGATTCTGGTGTAACAATTATTGCTAAAAGA AGTGGAAAAATTGAATATGTTGATGCTTCACGTATTGTTGTACGAATTAAAGATGAAAAAATTCGTACTTATGAATCAGG AATAGATATATATAATCTTACAAAATATTCAAGATCTAATCAAAATACTTGTATTAATCAAATTCCATGTATTAATTTAA ATGATTCTATTAAAAAAGGTGATGTTTTAGCTGACGGACCTTCAACTGATTTAGGAGAATTAGCACTTGGACAAAATATG CGCGTTGCATTTATGCCTTGGAATGGATACAATTTTGAAGATTCAATATTAATTTCAGAAAAAGTAGAAAGAGAAGATAA ATTTACTACAATTCATATTCAAGAATTATCTTGTATTTGCAGAGATACAAAACTTGGAATAGAAGAAATTACATCAGATA TACCTAATATTGGAGAATCAGCATTATCTAAATTAGATACTTCGGGAATTATATATATAGGTGCTGACGTATCTAGTGGT GATGTTCTAGTAGGAAAAGTTACCCCAAAAGGAGAAACTCAGTTAACTCCTGAAGAAAAATTATTAAGAGCAATTTTTGG AGAAAAAGCTTCTGATGTAAAAGATTCCTCTCTACGTGTTCCAAACGGAACTAATGGAACTGTGATCGATGTACAAATAT TTACTAGAGATGGAGTAAAAAAAGACAAACGCACAATAGAAATAGAAGAAATGCTATTAAAAAAAGCAAAAAAAGATTTA ACAGAAGAATTAAAAATTTTTGAATTAAATATTATCAATCGAATAAACAAAATATTACTTACATTAAAAACAAAAATAAA TTGTATTGTAGCTAATTCTTTAAATGAATATTTTAAAAAAAAAATAAAATATCCAAAAAAAATCAAAAAAAAAATTCATA CATTAAAAATACAATATAAACAACTACAAAAAAAATTTAAAAAAAAAATTAAAGAAAAAACTAAAAAAATAATACAAGGT GACGAATTAGCTCCAGGAATTTTAAAAATTGTAAAAATTTTTCTAGCTGTAAAACGAAAAATACAACCAGGTGATAAAAT GGCTGGTCGACACGGAAATAAAGGAGTTGTATCAAAAATAAATCCTGTTGAAGACATGCCTTATGATAATAATGGTGAAC CTATTGATATTGTATTAAATCCTCTAGGTGTACCTTCACGTATGAATTTAGGTCAAATTCTTGAAACACATTTAGGATTA GCAGCAAAAGGTATTGGAAATATAATTAATAGAATGCTAAAAACAAATAAAAAAATATATAAAATCCGTAAATTTTTACA AAAAGTATATAATCTTGGTGAAAATATAAATCAAAAAATTAATTTAGATAATTTTTCTGATATAGAAATATTACAATTAG CAAAAAATTTACGTATAGGATTACCTATTGCTACACCAGTTTTTGATGGTGTTAATGAAAAAGAAATAAAAAAATTATTA AAAATGAGTAATTTTTCTACTTCTGGACAGATTACATTATTCGATGGTAGAACAGGTGAAAAATTTGAAAGAAATGTTAC CGTTGGATACATGTATATGTTAAAACTAAACCATTTAGTAGATGATAAAATGCATGCTCGATCTACTGGATCATATAGTT TAATTACACAACAACCGCTGGGTGGGAAAGCACAGTTTGGTGGGCAAAGATTTGGAGAAATGGAAGTATGGGCTTTAGAA GCATACGGAGCGTCACATACTTTACAAGAAATGTTAACTGTAAAATCAGATGATGTAACTGGAAGAACTAAAATGTATAA AAACATTGTTAGTGGAAAACATAATATGGAACCAGGTATGCCAGAATCTTTTAATGTTTTAGTAAAAGAAATACGTTCTT TAGGAATAAATATTGAATTAAACAATAATTAA Protein sequence : MIYSYTEKKRIRENFGKQPKILDIPYLLSIQIDSFKKFIEPKKNNYQGLESAFQSIFPIRSYNGCAELQYVSYTLGKKLF DMYESKTRGTTYSVPLRVKLQLIIYEKDSKNTNVKHIKEQEVYMGELPLMTHNGTFIINGTERVVVSQLHRSPGVFFDSD KGKTHSSGKILYNARIIPYRGSWLDVEFDPKDHLFIRIDRRRKIPATVLLHALNFSTEKILKIFFKHDIFYIKNKNIYMY LIPKRLKGEIIPFEIIKNKKRYIKKGERITTEHIKKLKKKKIKTIQIPEEYLYGKTISKNYYHPKTKEILIKSNTTLTQD EFNKIKNFNNKKFYVLFTNNIDNGAYISETLKIDTTKDRLTALIEIYKIMRPGEPPTKEAAENLFNNLFFSQERYDLSPV GRMKFNKSLKRKEKKGSGILNKEDIIDVIKKLINIKNGKGEIDDIDHLSNRRVRSVGEMVENQFRIGLVRVERAVRERLS LSDLDTLMPQDIINAKPISSAIKEFFGSSQLSQFMDQNNPLAEITHKRRISALGIGGLTRERAGFEVRDVHPTHYGRVCP VETPEGPNIGLINSLSIYARTNQYGFLETPYRKVKNGTVTTKIKYLSAIEEGNYIIAQANTKINKFGKFYKKFVTCRYNG EFGLFKNKKVNYMDISTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTIKSEKPLVGTGMERSVAIDSGVTIIAKR SGKIEYVDASRIVVRIKDEKIRTYESGIDIYNLTKYSRSNQNTCINQIPCINLNDSIKKGDVLADGPSTDLGELALGQNM RVAFMPWNGYNFEDSILISEKVEREDKFTTIHIQELSCICRDTKLGIEEITSDIPNIGESALSKLDTSGIIYIGADVSSG DVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTNGTVIDVQIFTRDGVKKDKRTIEIEEMLLKKAKKDL TEELKIFELNIINRINKILLTLKTKINCIVANSLNEYFKKKIKYPKKIKKKIHTLKIQYKQLQKKFKKKIKEKTKKIIQG DELAPGILKIVKIFLAVKRKIQPGDKMAGRHGNKGVVSKINPVEDMPYDNNGEPIDIVLNPLGVPSRMNLGQILETHLGL AAKGIGNIINRMLKTNKKIYKIRKFLQKVYNLGENINQKINLDNFSDIEILQLAKNLRIGLPIATPVFDGVNEKEIKKLL KMSNFSTSGQITLFDGRTGEKFERNVTVGYMYMLKLNHLVDDKMHARSTGSYSLITQQPLGGKAQFGGQRFGEMEVWALE AYGASHTLQEMLTVKSDDVTGRTKMYKNIVSGKHNMEPGMPESFNVLVKEIRSLGINIELNNN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 65 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 65 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_802597.1 | RNA polymerase, b subunit | CP001138.1.gene4362. | Protein | 0.0 | 73 |
| rpoB | YP_802597.1 | RNA polymerase, b subunit | CP000034.1.gene3741. | Protein | 0.0 | 73 |
| rpoB | YP_802597.1 | RNA polymerase, b subunit | NC_002695.1.914942.p | Protein | 0.0 | 73 |
| rpoB | YP_802597.1 | RNA polymerase, b subunit | CP001918.1.gene250.p | Protein | 0.0 | 73 |
| rpoB | YP_802597.1 | RNA polymerase, b subunit | CP000647.1.gene4402. | Protein | 0.0 | 73 |
| rpoB | YP_802597.1 | RNA polymerase, b subunit | CP004022.1.gene2794. | Protein | 0.0 | 72 |
| rpoB | YP_802597.1 | RNA polymerase, b subunit | NC_002516.2.881699.p | Protein | 0.0 | 66 |
| rpoB | YP_802597.1 | RNA polymerase, b subunit | NC_010400.5987325.p0 | Protein | 0.0 | 65 |
| rpoB | YP_802597.1 | RNA polymerase, b subunit | NC_010611.6233925.p0 | Protein | 0.0 | 65 |
| rpoB | YP_802597.1 | RNA polymerase, b subunit | NC_011595.7060572.p0 | Protein | 0.0 | 65 |
| rpoB | YP_802597.1 | RNA polymerase, b subunit | NC_010410.6003841.p0 | Protein | 0.0 | 65 |
| rpoB | YP_802597.1 | RNA polymerase, b subunit | NC_011586.7046027.p0 | Protein | 0.0 | 65 |
| rpoB | YP_802597.1 | RNA polymerase, b subunit | NC_009085.4918494.p0 | Protein | 0.0 | 65 |
| rpoB | YP_802597.1 | RNA polymerase, b subunit | CP000675.2.gene392.p | Protein | 0.0 | 65 |
| rpoB | YP_802597.1 | RNA polymerase, b subunit | NC_008702.1.4609796. | Protein | 0.0 | 61 |
| rpoB | YP_802597.1 | RNA polymerase, b subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 60 |
| rpoB | YP_802597.1 | RNA polymerase, b subunit | NC_011035.1.6448762. | Protein | 0.0 | 59 |
