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Name : Sfum_1549 (Sfum_1549) Accession : YP_845671.1 Strain : Syntrophobacter fumaroxidans MPOB Genome accession: NC_008554 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 1906074 - 1910186 bp Length : 4113 bp Strand : + Note : KEGG: gsu:GSU2863 DNA-directed RNA polymerase, beta subunit; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2, domain 6; RNA polymerase Rpb2, domain 7; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase DNA sequence : ATGCCTACGGCTTTGACCCATGAATACCGGGTGCGAAAGAATTTTGGCAAGATCCACAAAATCATCGACATCCCCAATCT CATCCAGATGCAGAAGGAAAGCTACGAGTTGTTTCTGCAGAGGGATGTCCCGTCGGAAGCCAGGAGCGAGCGCGGTCTGC AGGAGGTATTCAAGAGCGTTTTCCCCATCGAGGACTTCAGCGGAACGGCTTCCCTGGAATTCGTGCAGTACAGTTTCGGC GAGGTCAAGTATGAGGTGGAAGAGTGCCTTGCCCGGGGCATGACCTACGAAGCCCCGGTGAAGATCGTCGTCCGCCTGGT CGTCTACGATGTGGATAAGGAAGCGGGAACCCGGTCCATAAGGGACATCAAGGAGCAGGAAATCTACTTCGGCACCCTCC CCCTGATGACCGACAACGGGACTTTCATCATCAACGGCACCGAACGCGTCATCGTCAGCCAGTTGCACCGGTCTCCCGGT ATTTTTTTTGACCATGATCGCGGGAAGACCCACTCCAGTGGAAAGATCCTGTATTCCGCGCGCATCATCCCCCTGCGCGG CTCCTGGCTCGACCTCGAATTCGACCCGAAAGACATTCTGTACATCCGGATCGATCGACGCCGCAAGTTTCCGGTCACCG TTCTCCTCAAAGCTCTCGGATATGCCACGGAAGAACTGCTCAACTACTTCTATCCCAGCGAAAAGATCTTTTTGAAAAGC GAGGCCCAGTCGGAGAAGGAATTGAACCCCGATATTCTGATGGGAAGCCGCGCCCCGGAAGACATCCTGCATCCGCAAAC CGGCGAAGTGTTGATCAAGAAGAACAGGAAGCTCGGCAAGCAGGCCCTCCGGCGGCTCCAGGAAGTGGGCATCAACCGTT TGCCCATGAAGAGCACCGAACTGATCGGCCAGGTGCTCGCCCAGGATGTGATCGACTACGGCACGGGCGAAATCGTCGCC GAGTGCAACGACAGCATCGACGCGGACATGCTCAAGGAATTCGTGGAGCGCGGCGTTGGAGAGATCGAGCTCCTGCACCT GGAGGGACAGGACGTCAGCCCGTCGTTCCGCAACACGCTCCTGATGGACAAGGTCAACACGCAGGAAGACGCCCTGATCG AAATCTATCGGAGGCTGCGGCCCAGCAATCCGCCCACTCTCGAAGTGGCGACCGAATTCTTCAACAACCTCTTTTTCAAC CCCGACCACTACGATCTGTCGGAAGTCGGCCGCCTCAAGCTCAACCTGCAGCTTGGCCTGGAAGTGCCGCTCGACTACCG GACTCTGCGCAAGGACGATATCCTGATGGCGGTCCGCCAGCTCATCCGGCTCAAAGACTCACAGGGGCCCGTCGACGACA TCGACAACCTTGGCAACCGGAGAGTGCGCGCCGTCGGCGAATTGCTCGAGAATCAGTACCGGATCGGACTTGTGCGCATG GAGCGCGCCATAAAGGAACGCATGACGCTCCAGGAAGTCGAGGCGCTCATGCCGCACGACCTCATCAACGCCAAACCGGT ATCGGCGGTGGTGAAGGAGTTTTTCGGCACCAGCCAGCTCTCGCAGTTCATGGACCAGACGAACCCTCTTTCCGAAATCA CGCACAAGCGACGCCTGAGCGCGCTCGGCCCGGGGGGCCTCACCCGGGAGCGGGCCGGATTCGAGGTCCGGGACGTTCAT CCCACGCATTACGGCCGGATTTGCCCCATCGAAACCCCGGAAGGTCCGAACATCGGTCTCATCGTTTCGCTGTCGACTTA CGCCAGGGTGAATCCTTACGGGTTCATCGAAACGCCCTATCGGAAGGTTGACGGGTCGAGCGCCCGGAAGGATGTGAGCT ATCTGACGGCCATGGACGAGAAGGAGTACCCCATCGCCCAGGCCAACGCGCCCCTGGACGAAAAGGGACGCTTTCTGCTC GACCTGGTGTCCGCGCGGGTGGCGGGCGAGCCCGTGATGGTCCCGCCCAATGAAATCCGTTACATGGACGTATCCCCCAA CCAGCTGGTGAGTGTTTCCGCATCCCTGATCCCGTTTCTGGAGCACGATGACGCCAACCGCGCCCTCATGGGCTCCAACA TGCAGCGCCAGGCGGTCCCTCTCATTCAGACCCGCGCTCCTCTGGTCGGCACCGGGATCGAACGGATCGTGGCCAAGGAC AGCGGCGTGGCCATCGTTGCCAGGCGAACCGGAGTCGTGGAATACGTGGACGCCACCCGGATCGTCATTCGAGCCATCGA GGATAACGGGGAGATGGGCAGTGGAGTGGACATCTACAAGCTCATCAAGTTTCAGAGATCGAACCAGAACACCTGCATCA ACCAGAAACCGCTGGTGCAGCACGGTGACCTGGTGACAAAGGGTCAGATCATCGCCGACGGCCCTTCGACCGACCACGGC GAACTGGCACTCGGAAGAAACGTGATGGTCGCGTTCATGAGCTGGGGAGGGTACAACTTCGAGGATTCGATCCTGGTGAG CGAGAGGATCGGCAAGGAAGACGTGTTCACATCGATTCACATCGAAGAATTTGAAGTGGTGGCTCGGGACACGAAGTTGG GCAAGGAGGACATCACGCGCGACATTCCCAACGTCGGCGAGGAGGCGCTGAAGAACCTCGACGAAAGCGGCATCATCCGC GTGGGAGCTTACATCAAGCCCAACGACATCCTGGTGGGCAAAGTGACTCCCAAGGGCGAGTCGCAGCTGACCCCGGAGGA AAAGCTCCTGCGGGCCATTTTCGGCGAGAAGGCGAGCGACGTGAAAGACACGTCGTTGCGCGTACCGCCCGGGGTCGAGG GGATCATCATCGACGCCAAGGTGTTTTCGCGCAAGGGCGTGGAGAAGGACGAGCGCACGAAGACCATCGAGGACCAGGAA ATCTCCCGCCTGATGAAAGATCAGCGCGATGAGCTGGAGATCATCTTCAAGTCGACGGTCAAGCGGCTGGCAAAGCTCCT GGAAAACCAGGTGAGCGACAGCGCCATAAAGGACGGGAAGAAAGTCTACATCAAGAAGGGCGAGGTCTTCACCGAGGAGA TTCTGCTGAACCTGCCCAGCGGACACTGGGATCAATTGACGGTCGCCAAGGATCCGACCGTGTCCATGGAAATCGAGAAC ATTCTCGCCAACTACCGGGAACAGGTTCAGTTGGTGAAATCGTTGTTCGAAGAAAAGATCGGCAAGCTCAAACGCGGAGA CGAGCTGCCTCCCGGCGTCATCAAGATGGTCAAGGTTTATGTCGCCGTCAAACGGAAGCTCCAGGTCGGAGACAAGATGG CCGGCCGCCACGGAAACAAGGGCGTGGTCTCGAGGATTCTCCCGGCCGAGGATATGCCTTACTTCCCCGACGGAACGCCG GTCGACATCGTTTTGAATCCTCTTGGCGTGCCCTCCCGTATGAACGTGGGCCAGGTGCTGGAAACCCACATCGGATGGGC CGCGAAGGGAATCGGGATGCAGCTGGCTCAGATGCTCGAGGAATGCAGGGAGCGGGAAACGATGAACGAAAAGCTCCAGC GTATTTACAACAAGCTGGAGTTCGGAACCTACTTCAAAGACGCATCGGAGCGGGAGCTCAGAGGGCTCATTCCCGACTTC AAGGAAGGCATACATGTCGCCTCCCCGGTTTTCGACGGCGCGGAAGAGGCTGAGATCCGAGCGTTCCTGAGTGAGGCCGG GGTGTCGGAAACCGGGCAATCAGTCCTCTACGACGGCAGAACGGGCATGCCTTTCGACCAGCCGGTCACGGTGGGCGTGA TGTACATGCTCAAGCTGCATCACCTGGTGGACGACAAGATCCACGCGCGATCCATCGGCCCCTATTCTCTCGTGACCCAG CAGCCTCTGGGAGGCAAGGCGCAGTTCGGCGGGCAGCGGCTGGGCGAAATGGAAGTCTGGACCATGGAAGCCTACGGCGC CGCCTATGCGCTCCAGGAATTCCTGACGGTCAAGTCTGACGACGTGGCCGGCCGCACGCGCATGTACGAGAAAATCGTGA AGGGGGATAACACTCTCGAAGCCGGGCTGCCCGAATCTTTCAACGTTCTGGTTAAGGAGCTTCAGGCCCTCGCCCTGGAC GTGCGGCTCCTGGAAGAAGAGGAAGGCAATTGA Protein sequence : MPTALTHEYRVRKNFGKIHKIIDIPNLIQMQKESYELFLQRDVPSEARSERGLQEVFKSVFPIEDFSGTASLEFVQYSFG EVKYEVEECLARGMTYEAPVKIVVRLVVYDVDKEAGTRSIRDIKEQEIYFGTLPLMTDNGTFIINGTERVIVSQLHRSPG IFFDHDRGKTHSSGKILYSARIIPLRGSWLDLEFDPKDILYIRIDRRRKFPVTVLLKALGYATEELLNYFYPSEKIFLKS EAQSEKELNPDILMGSRAPEDILHPQTGEVLIKKNRKLGKQALRRLQEVGINRLPMKSTELIGQVLAQDVIDYGTGEIVA ECNDSIDADMLKEFVERGVGEIELLHLEGQDVSPSFRNTLLMDKVNTQEDALIEIYRRLRPSNPPTLEVATEFFNNLFFN PDHYDLSEVGRLKLNLQLGLEVPLDYRTLRKDDILMAVRQLIRLKDSQGPVDDIDNLGNRRVRAVGELLENQYRIGLVRM ERAIKERMTLQEVEALMPHDLINAKPVSAVVKEFFGTSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVH PTHYGRICPIETPEGPNIGLIVSLSTYARVNPYGFIETPYRKVDGSSARKDVSYLTAMDEKEYPIAQANAPLDEKGRFLL DLVSARVAGEPVMVPPNEIRYMDVSPNQLVSVSASLIPFLEHDDANRALMGSNMQRQAVPLIQTRAPLVGTGIERIVAKD SGVAIVARRTGVVEYVDATRIVIRAIEDNGEMGSGVDIYKLIKFQRSNQNTCINQKPLVQHGDLVTKGQIIADGPSTDHG ELALGRNVMVAFMSWGGYNFEDSILVSERIGKEDVFTSIHIEEFEVVARDTKLGKEDITRDIPNVGEEALKNLDESGIIR VGAYIKPNDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDTSLRVPPGVEGIIIDAKVFSRKGVEKDERTKTIEDQE ISRLMKDQRDELEIIFKSTVKRLAKLLENQVSDSAIKDGKKVYIKKGEVFTEEILLNLPSGHWDQLTVAKDPTVSMEIEN ILANYREQVQLVKSLFEEKIGKLKRGDELPPGVIKMVKVYVAVKRKLQVGDKMAGRHGNKGVVSRILPAEDMPYFPDGTP VDIVLNPLGVPSRMNVGQVLETHIGWAAKGIGMQLAQMLEECRERETMNEKLQRIYNKLEFGTYFKDASERELRGLIPDF KEGIHVASPVFDGAEEAEIRAFLSEAGVSETGQSVLYDGRTGMPFDQPVTVGVMYMLKLHHLVDDKIHARSIGPYSLVTQ QPLGGKAQFGGQRLGEMEVWTMEAYGAAYALQEFLTVKSDDVAGRTRMYEKIVKGDNTLEAGLPESFNVLVKELQALALD VRLLEEEEGN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 56 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 56 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sfum_1549 | YP_845671.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 58 |
| Sfum_1549 | YP_845671.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 57 |
| Sfum_1549 | YP_845671.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 57 |
| Sfum_1549 | YP_845671.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 57 |
| Sfum_1549 | YP_845671.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 56 |
| Sfum_1549 | YP_845671.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 56 |
| Sfum_1549 | YP_845671.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 56 |
| Sfum_1549 | YP_845671.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 56 |
| Sfum_1549 | YP_845671.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 56 |
| Sfum_1549 | YP_845671.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 56 |
| Sfum_1549 | YP_845671.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 56 |
| Sfum_1549 | YP_845671.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 56 |
| Sfum_1549 | YP_845671.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 56 |
| Sfum_1549 | YP_845671.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 56 |
| Sfum_1549 | YP_845671.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 56 |
| Sfum_1549 | YP_845671.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 56 |
| Sfum_1549 | YP_845671.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 56 |
| Sfum_1549 | YP_845671.1 | DNA-directed RNA polymerase subunit beta | AM180355.1.gene120.p | Protein | 0.0 | 49 |
