Gene Information

Name : lolD (AHA_2006)
Accession : YP_856537.1
Strain : Aeromonas hydrophila ATCC 7966
Genome accession: NC_008570
Putative virulence/resistance : Resistance
Product : lipoprotein releasing system, ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2209518 - 2210300 bp
Length : 783 bp
Strand : +
Note : identified by match to protein family HMM PF00005; match to protein family HMM TIGR02211

DNA sequence : 
ATGAATAATTCATCTTCTGTTGTTACTGGTGCCGGTGTTGCTGCCGGCGCCGGCGTTGTTACAGGTGCAAGTGGAGCCTC
CTTTATGAATCAATCCGTCTCCTGCGAGCCGCTGCTGCGCTGTCAGGCCCTCAACCATGTCTATAAAGAGGGCGATCTGG
AGACCCAGGTACTCAAGGGCATCGATCTTAGCGTGGCGCCCGGCGAGATGCTGGCGGTGGTGGGCAGCTCGGGCTCGGGC
AAGACCACCCTGCTGCACCTGATGGGGGCGCTCGACAACCCCTCCAGCGGCGCCGTGCTGTTCAAGGGGCAGGACATCCA
TCGCTGGGACAGCCGTACCCAGGCAAAGTTTCGCAACCAGGAGCTGGGCTTCGTTTACCAGTTCCACCACCTGCTCTCCG
AGTTCACCGCGCTGGAAAATGCTGCCATGCCGCTGCTGATCGCCGGTGAGTCGGTGAAGAGCGCGACCGACAAGGCGAGC
CGGATGCTGGGGCGGGTAGGGCTCTCCCACCGTCTCAACCACAGACCGTCCGAACTCTCCGGTGGCGAGCGCCAGCGGGT
GGCCATCGCCCGTGCCCTGGTCAACGAACCCAGCCTGGTGCTGGCGGACGAGCCCACCGGCAACCTGGATCACGCCAGCG
CCACCGCCGTCTATGAGCTGCTCTGCGAGCTCAACCGTGAGCTCGGCACCGCGTTCGTGGTGGTGACCCACGATCTCAGC
CTGGCAGCCAAGCTCCATCGCCGGGTGACCCTGGTGAGCGGCGTGATGGCGGAGGTCGCCTGA

Protein sequence : 
MNNSSSVVTGAGVAAGAGVVTGASGASFMNQSVSCEPLLRCQALNHVYKEGDLETQVLKGIDLSVAPGEMLAVVGSSGSG
KTTLLHLMGALDNPSSGAVLFKGQDIHRWDSRTQAKFRNQELGFVYQFHHLLSEFTALENAAMPLLIAGESVKSATDKAS
RMLGRVGLSHRLNHRPSELSGGERQRVAIARALVNEPSLVLADEPTGNLDHASATAVYELLCELNRELGTAFVVVTHDLS
LAAKLHRRVTLVSGVMAEVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_856537.1 lipoprotein releasing system, ATP-binding protein NC_012469.1.7686878. Protein 1e-40 48
lolD YP_856537.1 lipoprotein releasing system, ATP-binding protein NC_008702.1.4606598. Protein 1e-34 44