Gene Information

Name : Pden_0800 (Pden_0800)
Accession : YP_914608.1
Strain :
Genome accession: NC_008686
Putative virulence/resistance : Unknown
Product : ABC transporter
Function : -
COG functional category : R : General function prediction only
COG ID : COG1123
EC number : -
Position : 774324 - 775946 bp
Length : 1623 bp
Strand : -
Note : PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: sil:SPO0098 peptide/opine/nickel uptake family ABC transporter, ATP-binding protein

DNA sequence :
ATGATCCAGACCAGCCGCCTTTCGGTCGAGATCGGCCCGCATGAGATCCTGCGCGGCATCGACCTGGCGCTGCCGCCCGG
CCAAATCACCGGGCTGGTCGGCGAAAGCGGCTCGGGCAAGTCCATGGCCGCGCTGGCGATCATGGGCCTGCTGCCCGATG
GCATGCGGACCGAGGGCCGGGTGGATCTGGACGGCCGGAACCTGCTGGAGCTGTCAGAGCGCGATCTGTGCCGCATCCGT
GGCAAGCGCATCGGCATGATCTTTCAAGAGCCGATGACGGCGCTGAACCCGCTGATGACCATCGGCGACCAGGTGGCCGA
GGTGCTGCGCATTCATCAGGGGCTGGACCGCAAGGCCGCGCAGGAACGTGCCCGCGACCGGCTGGACCGCGTCGGCCTGA
CCGCGCCGCGCTTTCCGCTGACGCTTTACCCGCACGAGCTATCGGGCGGCCAGCGCCAGCGCGTCGCCATTGCGCTGGCC
ATCGCCTTGCGTCCCGACCTGCTGATCGCCGACGAGCCGACGACCGCGCTGGACGTGACCACGCAGGCCAAGATCCTCGA
CCTGCTCAAGGCGTTGGTCCGGGACGAGGGGATGGCGCTTCTGCTCATCACCCACGACCTTGCCGTGGTGGCGGGCATCG
CCGACCGCGTGGCGGTGATGCAGCACGGGACCATCGTCGAGGAAGGTCCGACCGAACAGGTGTTTCGCCAGCAGCGCCAC
CCCTATACCCGCGCGCTGTTCGCCGCCTCGACCCATCAGCCGCGGCTGGTGCTGCCCCGGGCGGAGCCCCGGCCGCTCTT
GCAGGTCGAGGGGGCGGTGCGCGAATATCCCCTGCCCCGCCGCAGCCTCGGCGAAGCGCGCGGCAGCCTGCGGGCGGTGG
ACGGGGTCGGCTTCCGCATCGAGGCCGGCGAGTCGGTCGGGCTGGTCGGCGAATCCGGTTGCGGGAAATCGACCCTGACA
CGGGCGATCCTGGGGCTCGACCCGCTGCAGGGCGGCCGCATCCTGCTGGACGGACAGGAGATCCGGGCCGGTCGCGCCAT
GCCGGCCGGGCTGCGCGCCAAGATGCAGGTGGTGTTCCAGGACCCGTTCGGCAGCTTCGATCCGCGCTGGCGGGTCGAGC
GGCTGGTGGCCGAGCCCTTTCACCTGACCGGCCTGCCCCGCGACTGGCGCGAACAGGTGGCCGAGGCGCTTTACGAGGTC
GGTATCGCGGGCGACGCCATGCGCCGGCATATCCACGAATTTTCCGGCGGCCAGCGCCAGCGCATCGCAATCGCCCGGGC
GTTGATCATCAAGCCCCGGCTGATCGTGCTGGACGAGGCGGTCAGCGCGCTGGACGTGCGGGTGCGGGCGCAGGTCCTGG
ACCTGCTGGCAGGGCTGCGGGTCAGCCACGGCCTGGCCTATCTGTTCATCAGCCACGACCTGTCGGTGGTGCGCCAGATC
ACCGACCGGGTGATGATCATGGAAAAGGGCCGCATCGTCGAGACCGGCCCGACCCACAAGGTGATGGACGCGCCCGAGCA
TCCCTATACGCAAAGCCTGCTGGCCGCGACGCCGCGCATACCGGTGGACTGGCACGTTCACGAACAGGTCAGCAGGGTTG
CACTTTCGACCCCGGCGCCATAG

Protein sequence :
MIQTSRLSVEIGPHEILRGIDLALPPGQITGLVGESGSGKSMAALAIMGLLPDGMRTEGRVDLDGRNLLELSERDLCRIR
GKRIGMIFQEPMTALNPLMTIGDQVAEVLRIHQGLDRKAAQERARDRLDRVGLTAPRFPLTLYPHELSGGQRQRVAIALA
IALRPDLLIADEPTTALDVTTQAKILDLLKALVRDEGMALLLITHDLAVVAGIADRVAVMQHGTIVEEGPTEQVFRQQRH
PYTRALFAASTHQPRLVLPRAEPRPLLQVEGAVREYPLPRRSLGEARGSLRAVDGVGFRIEAGESVGLVGESGCGKSTLT
RAILGLDPLQGGRILLDGQEIRAGRAMPAGLRAKMQVVFQDPFGSFDPRWRVERLVAEPFHLTGLPRDWREQVAEALYEV
GIAGDAMRRHIHEFSGGQRQRIAIARALIIKPRLIVLDEAVSALDVRVRAQVLDLLAGLRVSHGLAYLFISHDLSVVRQI
TDRVMIMEKGRIVETGPTHKVMDAPEHPYTQSLLAATPRIPVDWHVHEQVSRVALSTPAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cpfrc_01561 YP_003783961.1 hypothetical protein Not tested PiCp 6 Protein 6e-83 47
oppDF2 YP_005686002.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 6e-83 47
oppDF2 YP_005681814.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 6e-83 47
oppDF2 YP_005683914.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 6e-83 47
dppD YP_005160017.1 putative peptide ABC transport system ATP-binding protein Not tested Not named Protein 4e-86 42