Gene Information

Name : Sama_1468 (Sama_1468)
Accession : YP_927345.1
Strain : Shewanella amazonensis SB2B
Genome accession: NC_008700
Putative virulence/resistance : Resistance
Product : putative macrolide efflux ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1776898 - 1777590 bp
Length : 693 bp
Strand : +
Note : KEGG: mxa:MXAN_4199 putative macrolide efflux ABC transporter, ATP-binding protein

DNA sequence : 
ATGATATCGCTACAGGCATTGACCAAGTCCTTCAGGATGGGGGACGCCGAAGTTCAGGCTCTCCGGGGCGTTGACATTCA
TATCCGACAAAACGAATTCGTTGCCATTATGGGGCCCTCAGGCTCCGGTAAGTCCACACTCATGAACATCATCGGCTGTC
TCGACAGGCCTACGTCAGGCAATTATCTGCTTAATGGCAGTGCCGTGGGTGGCTTGTCGGACGATGCCCTGTCGGCGGTG
CGAAATCGTGAAATTGGCTTTGTTTTTCAAAGCTTTCATCTGCTTCCTCGGTTATCTGCGCTGGACAATGTACTGTTGCC
ACTGCGATTTTCTGAAACACCCCGGGGGGACAGGCAACACGCCATCGAACTTCTTGAGCGGGTGGGTTTGGGGCAACGGC
TCGACCATCGCCCCAATCAGCTTTCTGGCGGTCAGCGTCAGCGGGTGGCCATTGCTCGGGCGCTGGTCAACCGCCCCACC
TTGCTGTTGGCCGATGAACCCACGGGGGCGCTGGACTCCAAGACCTCGGTGGAAATCATGGCCCTGTTTGATGAGCTGCA
TCTAAGCGGCCAAACCATAGTGCTGGTGACCCACGAAGAAGAAGTGGCCGAGTGCGCCGGGCGAATTATCCGCATGCGCG
ATGGTGTGGTGCAACAGGACAAGCAAAAGCCCAGGGAGGTGAGCAATGGTTAA

Protein sequence : 
MISLQALTKSFRMGDAEVQALRGVDIHIRQNEFVAIMGPSGSGKSTLMNIIGCLDRPTSGNYLLNGSAVGGLSDDALSAV
RNREIGFVFQSFHLLPRLSALDNVLLPLRFSETPRGDRQHAIELLERVGLGQRLDHRPNQLSGGQRQRVAIARALVNRPT
LLLADEPTGALDSKTSVEIMALFDELHLSGQTIVLVTHEEEVAECAGRIIRMRDGVVQQDKQKPREVSNG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sama_1468 YP_927345.1 putative macrolide efflux ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 1e-58 56
Sama_1468 YP_927345.1 putative macrolide efflux ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 1e-47 50
Sama_1468 YP_927345.1 putative macrolide efflux ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 1e-43 45
Sama_1468 YP_927345.1 putative macrolide efflux ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 2e-41 44