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Name : secD (Sama_2191) Accession : YP_928066.1 Strain : Shewanella amazonensis SB2B Genome accession: NC_008700 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 2649111 - 2650961 bp Length : 1851 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : GTGCTAAATAAATACCCAATGTGGAAGAACATCATGGTGGTGCTGGTCATCGCCATTGGTGGCTTCTATGCGCTGCCCAA CCTGTTCGGCGAGGATCATGCCGTACAGGTCGTGGCTACCCGTGGTGCAGACGTTACCGCAACTACCCAATCTGACGTGT CAGCAGCGCTGACCGCCAAGGGCATTGGCATCAAGCGATCTGAGCTTGAAAATGGCCAGTTGCTGGTGCGTGTGGCCAAT GCTGAAGATCAGCTCACAGCCAAAGAAACCATTGCCGAATTGCTGGGCGACAAATACACAGTAGCCCTTAACCTGGCACC GGCCACTCCTGAGTGGCTGGAGTCAGTGGGCGGCAGCCCCATGAAGCTGGGTCTCGACCTTCGCGGCGGTGTGCACTTCC TGATGGAAGTGGACATGAGCGAAGCCATCCGCAAGATGGAAGAGGCCAAGATTGCCGATTTTCGCAGTCAGCTTCGTGAA GAGCGTATTCGCTATGCCGGTGTGCATCGCACCGTGCGCGGTATCGAAATCAAGTTCCGTGACGCCGAGACTCTGTCTCA GGCAGAACGATTCCTGAAGAGCCGTGGCAATGACATGGTGTTTTCGGATATCTCCAGTGGTGACAACGTGGTACTGCTGG CGGTGATGAGCGAGGCCTACCTCAAGCAAATCAAAGAGGAAGCCCTGCTGCAAAACATCACGACCATCCGTAACCGTGTG AACGAGCTGGGTGTGGCTGAGCCTGTGGTGCAGCGTCAGGGTGCTGAGCGCATCATCGTGGAACTTCCCGGCGTACAGGA CACTGCCCGCGCCAAAGAAATTCTGGGTGCCACAGCCTCCATTGAATTCCATATGGTGGATGAAAAAGCCGACGTGGCTG CTGCTGCCAATGGCCGTGTGCCAGCCGGCAGCGAGCTGTATCAGCGCCGCGAAGGCGGCCCTGTGGTACTGAAGAAAGAA GTGATGCTGACCGGTGACCATATTACCGGTGCTCAGCCTTCTTTCGACGAATACAGCCGTCCACAGGTCGCTATTCAGTT GGATGCCAAGGGTGGGGAAATCTTCTCCAACGTTACCAAGGACAACATCGGCAAGCCGATGGCGACCCTGTTCATTGAAT ACAAGGACAGCGGTGAGCGTAACCCCGATGGCAGCGTGAAGATGCGTAAAATCGAGGAAGTTATCTCGGTTGCCACCATT CAGGCACGCCTTGGCCGTAACTTTGTTATCACCGGTCTGACCCACAGCGAGTCGCAGAATCTGGCGCTCTTGCTGCGTGC CGGTGCACTGATTGCTCCTGTATCCATCGTGGAAGAACGCACCATTGGTCCAAGCCTGGGTGCCGAAAACATCGAAAACG GTCTGCAGGCGATGATCTGGGGTATGGTTGTGGTACTGGCCTTTATGCTGGTGTACTACCGTGCCTTCGGTGTGATTGCC AACCTGGCGCTGTGTGCCAACCTCATCATGGTGGTGGGCGTGATGTCCATGATCCCGGGTGCGGTGCTGACCCTGCCGGG TATTGCCGGTATGGTATTGACTGTGGGTATGGCTGTTGACGGCAACGTACTGATTTATGAGCGTATCCGTGAAGAGCTTC GTGCCGGTCGCAGCGTACAGCAGGCTATCCACGAAGGTTATGGCAACGCACTGTCGACCATCGCCGACGCCAACATCACC ACCTTCCTGACGGCTCTGATTTTGTTTGCTGTGGGTACAGGTGCGGTAAAAGGCTTTGCCGTGACCCTGATGATTGGTAT TGCCACCTCCATGTTTACTGCCATTGTGGGTACACGAGCTATCGTGAACGCCCTCTGGGGTGGTAAGCGTGTGAAGAAAT TGTCGATTTAA Protein sequence : MLNKYPMWKNIMVVLVIAIGGFYALPNLFGEDHAVQVVATRGADVTATTQSDVSAALTAKGIGIKRSELENGQLLVRVAN AEDQLTAKETIAELLGDKYTVALNLAPATPEWLESVGGSPMKLGLDLRGGVHFLMEVDMSEAIRKMEEAKIADFRSQLRE ERIRYAGVHRTVRGIEIKFRDAETLSQAERFLKSRGNDMVFSDISSGDNVVLLAVMSEAYLKQIKEEALLQNITTIRNRV NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDEKADVAAAANGRVPAGSELYQRREGGPVVLKKE VMLTGDHITGAQPSFDEYSRPQVAIQLDAKGGEIFSNVTKDNIGKPMATLFIEYKDSGERNPDGSVKMRKIEEVISVATI QARLGRNFVITGLTHSESQNLALLLRAGALIAPVSIVEERTIGPSLGAENIENGLQAMIWGMVVVLAFMLVYYRAFGVIA NLALCANLIMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNALSTIADANIT TFLTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRAIVNALWGGKRVKKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 4e-123 | 49 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 9e-124 | 49 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 7e-123 | 48 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 7e-123 | 48 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 7e-123 | 48 |
