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Name : Ping_3446 (Ping_3446) Accession : YP_944729.1 Strain : Psychromonas ingrahamii 37 Genome accession: NC_008709 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 4260240 - 4264280 bp Length : 4041 bp Strand : - Note : KEGG: son:SO0224 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2, domain 6; RNA polymerase Rpb2, domain 7; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase R DNA sequence : ATGGGTTACTCTTATACTGAGAAAAAACGTATTCGTAAGGATTTTGGTAAACGTCCACAGGTGATGGAAAAACCATACCT GTTGTCGATTCAACTAGATTCATTCAAACGATTCATTGAAGTCGATTTAACTGGAGAAGTTGGTCTTGAGGCTGCTTTTA ACAGCATCTTCCCTATCGCCAGTTATTCCGGTACATCAGAATTGCAATATGTCAGCTACCGTTTAGGTGAGCCGGTATTT GATGTGAAAGAATGCCAAATCCGTGGAGTAACATACTCTGCTTCATTGCGCGTTAAATTACGTCTTGTTATTTATGATCG TGATGCACCAGCCGGCACGGTTAAAGATATTCGTGAACAAGAAGTATACATGGGTGAAATGCCACTCATGACAGAAAATG GTACTTTTGTAATCAATGGTACTGAGCGTGTTATCGTTTCGCAATTACATCGTAGTCCTGGTGTCTTCTTTGACCACGAT AAAGGTAAAACGCATAGTTCTGGTAAAGTACTTTATAATGCACGCGTAATTCCATACCGCGGTTCTTGGTTAGACTTTGA ATTTGATCCTAAAGATAACCTCTTTGTTCGTATTGACCGTCGTCGTAAACTCCCTGCAACTATTATGTTGCGAGCGCTTG AGTATTCGACACAAGAAATTCTGGCCATATTCTACGACACAACTAAATTTGACATCAAAGACGGTGTTATTTCAATGTCG CTAATTGCTGACCGCTTACGTGGTGAGATGGCGTTATTTGATATTGCAGCAAACGGCAAGATTTATGTTGAGCAGGGCAA GCGTATTACAGCGCGCCATATTAAACAGCTTGAAAAAGATAATATCAATACGCTTGACGTGCCAGTTGAGTACATTGCAG AGAAAGATCTGGTTGTTGCTAAAGATTATATCAGCAAAGAAACCGGTGAAATCATTGTTAGTGCCAACGACATATTAACG CTTGAAATATTAGCGGAACTGACTCAGTCAGGCATTACATCCTTTGATATTATTTATACTAATGAACTGGACTGCGGTTC GTTTATTTCCGATACATTACGTGTTGATAGTTCAAGTAATCGCCTTGAAGCGTTAGTTGAAATCTACCGCATGATGCGTC CGGGTGAGCCACCAACAAAAGACGCAGCAGAAGGTTTATTCCATAACCTGTTTTTTGCTGAAGAACGTTACGAGCTTTCT AAAGTTGGCCGTATGAAGTTCAACCGTCGTGTTGGTATTGATGGTGATGAAGGCGCTGGTATTTTATCCAAGGATGATAT ATTAAGTGTGATGAAAACACTGATTGCTATCCGTAATGGTGATGGCATTGTCGATGATATCGACCATCTTGGTAACCGCC GTATCCGTTGTGTTGGTGAAATGGCTGAAAACCAATTCCGTGTTGGTTTAGTCCGTGTTGAGCGTGCCGTAAGAGAACGT CTTTCTCTGGGCGATCTTGATGCGACTATGCCACAAGATTTAATCAATGCTAAACCTATTTCTGCTGCTGTTAAAGAGTT CTTTGGTTCATCACAACTGTCACAGTTTATGGATCAAAATAACCCGCTTTCAGAAGTAACCCATAAACGTCGTATTTCAG CATTAGGGCCTGGTGGTCTAACGCGTGAACGTGCCGGCTTTGAAGTACGTGACGTACATCCAACGCATTACGGTCGTTTG TGTCCAATCGAAACCCCAGAGGGACCAAACATTGGTCTGATTAACTCTTTGGCAACTTTCTCACGCACCAACAGTTACGG TTTCTTAGAAACACCTTACCGTAAAGTTGAAAATGGTAAACCAACAGATCAAGTTGAATACCTTTCTGCGATTGAAGAAG GTTCATTCGTCATTGCACAGGCAAGCGCCAGTATTGATGAAAATGGTTTGCTGGACGAAGAATTGATCCCTTGTCGTCAT AAAGGTGAGTCTACCTTTTTGAGCCCTGCGGATATCGATTATATGGACGTATCACCACAGCAGATTATTTCTGTTGCGGC GTCATTGATTCCATTCCTAGAGCATGATGATGCTAACCGTGCCTTAATGGGTTCGAACATGCAACGTCAAGCCGTTCCAA CACTACGTGCGGACAAACCGCTTGTAGGAACAGGTATTGAACGTCGTCTTGCAATCGATTCTGGTGTAACAATCATCGCT AAACGTAGTGGTGTTATTGATTATGTCGATGCATCACGTATTGTTGTTAAAGTTGATGATAACGAGCTCCTTCCTGGTGA AGCGGGTATCGATATTTACAATTTAACTAAATACACCCGTTCAAATCAGAATACCTGTATTAACCAAAAACCTACCTGTG AACCTGGCGAACCTATTGTTCGTGGTGATGTACTGGCCGATGGCCCGTCAACAGATATGGGCGACCTTGCTTTAGGCCAA AACATGAAGATTGCCTTCATGCCTTGGAATGGTTACAACTTTGAGGATTCAATCCTTATTTCTGAGCGTGTTTCACAGGA AGACAGATTCACTACAATTCATATTCAAGAGTTCTCATGTGTTGCACGTGAAACTAAATTGGGTAGTGAAGAAATTTCTG CCGATATCCCGAACGTTGGCGAAGCGGCACTAAGTAAACTTGATGAATCAGGTATTGTATACGTAGGTGCTGAAGTTAAA CCTGGCGATATACTTGTTGGTAAAGTGACACCTAAAGGTGAAACACAGCTAACACCTGAAGAAAAACTATTACGAGCTAT CTTTGGTGAGAAAGCATCAGACGTTAAAGACAGTTCTTTACGCGTGGCAGCCTCAACCTACGCAACGGTTATTGACGTAC AAGTCTTTACTCGAGATGGTGTTGAAAAAGATAAACGTGCGCTTGAAATAGAAGAAATGCAGCTTAAAGCGGCGAAGAAA GATTTAACTGAAAAGTTCAAAATCTTAGAAAACGCAATTTATGAAAAAGCCTTAGCGATTCTTGTTGGTGCCGGTCAGGA TGAAGCGCGTCTGCTACAGATGCCTCGTGCACAGTGGTTAGAAGTGCAGATTGATGATGAAACTAAACAGTCTTATTTAG ATCAAATCATTACTCAATATGATGAAGTCAAAGCTGATTACGATAAAGAGTTTGATATCAAACGTCGCAAAATCACTCAA GGTGATGATCTTGCACCTGGTGTTCAGAAGATTGTTAAAGTGTATCTAGCTGTCCGTCGTCGCCTGCAACCTGGTGATAA AATGGCGGGTCGTCACGGTAACAAAGGTGTTATTTCAAACATCGTGCCCGTAGAAGATATGCCGCATGATGAGTTTGGTG TTCCTGTTGATATCGTACTTAACCCGCTGGGTGTACCGTCACGGATGAACATCGGTCAGGTTTTGGAAACTCACTTAGGT CTTGCTGCCAAAGGTGTGGGCGAAAAACTTGAGCGTATGATTAAATACCAGCGTGACATTGAAATTACTAAAGTGCGCGA ATTCGTTCAGAAACTATACTCTTTCGGTGATGCGCCATGTCATGTTGATCTTAACGATTTTGATGATGAAGCGGTAATGC GTTTAGCTAAGAACCTGTACAAAGGGTTACCTGTTGCAACACCTGCATTTGATGGTGCCAACGAAGGCGAAATCCGTGAG CTGTTACGCATGGCTGATTTGCCTGAATCAGGTCAATTACAACTGACCGATGGCCGTACGGGTATTCAGTTTGAACGTCC TGTGACCGTTGGTTATATGTACATGCTGAAACTGAATCACTTGGTTGATGACAAGATGCATGCGCGTTCTACTGGCTCTT ACAGCTTAGTAACACAGCAGCCGCTTGGTGGTAAAGCGCAGTTCGGTGGACAACGTTTTGGTGAGATGGAAGTATGGGCA TTAGAAGCTTATGGTGCTGCTTACACTCTACAAGAAATGCTGACGGTTAAATCCGATGATGTTAACGGTCGTACTAAGAT GTATAAAAACATCGTTGACGGCGACCATAGAATGGAACCGGGCATGCCTGAATCATTCAACGTATTGTTGAAAGAGATCC GTTCATTAAGCATCAACATTGAACTAGATGAAAGTAACTAA Protein sequence : MGYSYTEKKRIRKDFGKRPQVMEKPYLLSIQLDSFKRFIEVDLTGEVGLEAAFNSIFPIASYSGTSELQYVSYRLGEPVF DVKECQIRGVTYSASLRVKLRLVIYDRDAPAGTVKDIREQEVYMGEMPLMTENGTFVINGTERVIVSQLHRSPGVFFDHD KGKTHSSGKVLYNARVIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIMLRALEYSTQEILAIFYDTTKFDIKDGVISMS LIADRLRGEMALFDIAANGKIYVEQGKRITARHIKQLEKDNINTLDVPVEYIAEKDLVVAKDYISKETGEIIVSANDILT LEILAELTQSGITSFDIIYTNELDCGSFISDTLRVDSSSNRLEALVEIYRMMRPGEPPTKDAAEGLFHNLFFAEERYELS KVGRMKFNRRVGIDGDEGAGILSKDDILSVMKTLIAIRNGDGIVDDIDHLGNRRIRCVGEMAENQFRVGLVRVERAVRER LSLGDLDATMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRL CPIETPEGPNIGLINSLATFSRTNSYGFLETPYRKVENGKPTDQVEYLSAIEEGSFVIAQASASIDENGLLDEELIPCRH KGESTFLSPADIDYMDVSPQQIISVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIERRLAIDSGVTIIA KRSGVIDYVDASRIVVKVDDNELLPGEAGIDIYNLTKYTRSNQNTCINQKPTCEPGEPIVRGDVLADGPSTDMGDLALGQ NMKIAFMPWNGYNFEDSILISERVSQEDRFTTIHIQEFSCVARETKLGSEEISADIPNVGEAALSKLDESGIVYVGAEVK PGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVAASTYATVIDVQVFTRDGVEKDKRALEIEEMQLKAAKK DLTEKFKILENAIYEKALAILVGAGQDEARLLQMPRAQWLEVQIDDETKQSYLDQIITQYDEVKADYDKEFDIKRRKITQ GDDLAPGVQKIVKVYLAVRRRLQPGDKMAGRHGNKGVISNIVPVEDMPHDEFGVPVDIVLNPLGVPSRMNIGQVLETHLG LAAKGVGEKLERMIKYQRDIEITKVREFVQKLYSFGDAPCHVDLNDFDDEAVMRLAKNLYKGLPVATPAFDGANEGEIRE LLRMADLPESGQLQLTDGRTGIQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWA LEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLSINIELDESN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 67 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 67 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Ping_3446 | YP_944729.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 78 |
| Ping_3446 | YP_944729.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 77 |
| Ping_3446 | YP_944729.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 77 |
| Ping_3446 | YP_944729.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 77 |
| Ping_3446 | YP_944729.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 77 |
| Ping_3446 | YP_944729.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 76 |
| Ping_3446 | YP_944729.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 70 |
| Ping_3446 | YP_944729.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 68 |
| Ping_3446 | YP_944729.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 67 |
| Ping_3446 | YP_944729.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 67 |
| Ping_3446 | YP_944729.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 67 |
| Ping_3446 | YP_944729.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 67 |
| Ping_3446 | YP_944729.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 67 |
| Ping_3446 | YP_944729.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 67 |
| Ping_3446 | YP_944729.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 63 |
| Ping_3446 | YP_944729.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 62 |
| Ping_3446 | YP_944729.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 60 |
| Ping_3446 | YP_944729.1 | DNA-directed RNA polymerase subunit beta | AE016830.1.gene3155. | Protein | 6e-180 | 44 |
| Ping_3446 | YP_944729.1 | DNA-directed RNA polymerase subunit beta | NC_012469.1.7686402. | Protein | 5e-174 | 44 |
