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Name : secD (Sputw3181_1526) Accession : YP_962918.1 Strain : Shewanella sp. W3-18-1 Genome accession: NC_008750 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1731500 - 1733350 bp Length : 1851 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : GTGTTAAATAAATACCCAATGTGGAAAAACATTATGGTGATGCTTATCATCGCCATAGGTTGTTTCTATGCCGTACCGAA CCTTTTTGGTGAAGATCACGCGGTGCAAGTGGTGGCGACTCGTGGTGCAGAAGTAACTGCATCTACCCAAGCCAGAGTGA ACGAGCTGTTAGCCGGTAAGGGCATTGCGGTAAAGCGCTCTGAGCTTGAAAAAGGCCAGTTGTTGGTTCGTGTGCAGAAC GCGGATCAACAATTATTAGCAAAAGAAACGATCGCAGAAGATTTAGGTGATAAGTTTAGTGTTGCACTTAACTTAGCTCC AGCAACACCGCAATGGCTCGAGTCTATGGGCGGCAGCCCAATGAAACTCGGTCTCGATCTTCGCGGCGGTGTGCACTTCT TAATGGAAGTGGACATGGGCGAAGCGATCCGCAAGATGGAAGAGGCCAAGGTTGCTGACTTTCGTGCTCAATTACGTGAA GAAACAATCCGTTATGCGGGCATTCGTGTTAATGCCTCTGGGATTGAGATTAAATTCCGTGATGCTGAAAGTTTAGCCAG TGCAGAACGTTTCCTTAAATCTCGCAGTAACGATATGGTCTTCACCGATGTGAGCAAGGGTGAAGATTTTGCCCTGCAAG CGGTGATGAGTGAAGCTTATCTTAAGCAGGTTAAAGAAGAAGCACTGCAACAAAACATTACCACTATTCGTAACCGTGTT AATGAGTTAGGTGTTGCTGAACCTGTAGTACAGCGCCAAGGTGCAGAGCGTATTATCGTTGAACTGCCCGGTGTACAAGA TACGGCTCGCGCTAAAGAAATTTTAGGGGCAACCGCATCGATTGAATTCCATATGGTGGATGACAAAGCCGATCCTAATG CCGCGCAATCAGGACGTATCTCTGCAGGCTCTGAAGTGTATCAACGTCGTGAAGGCGGCCAAGTCGTATTGAAAAAAGAA GTGATGCTAACGGGAGATCATATCACCGGCGCCCAACCTAGCTTTGATCAATACAGTCGCCCACAGGTGAGCATTAATCT TGACGCTAAAGGCGGTACCATTTTCTCTAATGTGACGAAGGACAACATAGGTAAACCTATGGCGACCTTATTCATTGAAT ATAAAGACAGTGGTGAACGTAACGCCGATGGCAGCGTGAAAATGCAGAAAATCCAAGAAGTGATTTCTGTGGCAACCATT CAAGCCCGTTTAGGTCGTAACTTTGTGATCACAGGTTTAAGCCACGGTGAAGCACAAAACCTTGCTTTGCTGTTACGCGC TGGAGCTTTGATTGCACCTGTATCCATTGTTGAAGAACGTACCATTGGTCCGAGTTTAGGCGCTGAAAATATTGAGAATG GTGTGCAAGCCATGGTGTGGGGTATGGCCGTCGTCTTAATCTTCATGCTGGTGTACTACCGCGGTTTTGGGCTTATCGCT AACCTCGCGTTAACTGCAAACTTAGTCATGGTTGTAGGCGTCATGTCGATGATCCCAGGCGCAGTATTGACCCTTCCCGG TATTGCGGGGATGGTGTTGACAGTGGGGATGGCAGTTGATGGTAACGTACTCATTTATGAGCGTATTCGTGAAGAACTTC GTGCAGGACGTAGTGTACAGCAGGCCATCCATGAAGGTTATGGTAATGCGTTTTCAACCATTGCCGATGCGAACATCACG ACTTTCCTTACCGCATTAATTTTATTTGCTGTGGGGACTGGTGCTGTTAAAGGCTTCGCGGTGACCTTGATGATAGGTAT TGCGACTTCCATGTTTACCTCTATCGTGGGTACTCGCTCCATCGTTAATGCGATTTGGGGTGGTAAGCGCGTGAAGACAC TGTCTATCTAA Protein sequence : MLNKYPMWKNIMVMLIIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQARVNELLAGKGIAVKRSELEKGQLLVRVQN ADQQLLAKETIAEDLGDKFSVALNLAPATPQWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRAQLRE ETIRYAGIRVNASGIEIKFRDAESLASAERFLKSRSNDMVFTDVSKGEDFALQAVMSEAYLKQVKEEALQQNITTIRNRV NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQSGRISAGSEVYQRREGGQVVLKKE VMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSNVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATI QARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIENGVQAMVWGMAVVLIFMLVYYRGFGLIA NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANIT TFLTALILFAVGTGAVKGFAVTLMIGIATSMFTSIVGTRSIVNAIWGGKRVKTLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 7e-125 | 48 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 7e-125 | 48 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 4e-125 | 48 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 2e-125 | 48 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 7e-125 | 48 |
