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Name : secD (NMC0550) Accession : YP_974646.1 Strain : Neisseria meningitidis FAM18 Genome accession: NC_008767 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 579350 - 581206 bp Length : 1857 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGATGAACCGTTATCCTTTATGGAAATATCTGCTGATTGTGTTCACGATTGCGGTTGCCGCAGTGTATTCGCTGCCCAA CCTATTCGGCGAAACACCCGCCGTGCAGGTATCGACCAACCGACAAGCCATCATCATCAACGAACAGACTCAATCCAAAG TGGATGCCGCGCTGCAAAACGCGGGTATTCAGACCGACGGGATGTTTGTTGTGGACAATTCACTGAAAGTGCGTTTCAAA GACACAGAAACGCAGCTTAAAGCGCGCGACGTCATCGAAAACACTTTGGGCGAAGGGTATATTACCGCGCTCAACCTGTT GGCGGACAGCCCCGAATGGATGGCGAAAATCAAAGCCAATCCGATGTTTTTGGGTTTGGACCTGCGCGGCGGCGTGCATT TCACCATGCAGGTCGATATGAAAGCGGCGATGCAGAAAACGTTTGAACGTTATTCGGGCGGCATCCGCCGCGAACTGCGC CGCGAAAAAATCCGCAGCGGCACGGTGCGTCAGGCTGGAAACAGCCTGACCGTCCCTTTGCAGGATGCAGGTGATGTGCA AAAGGCACTGCCGCAGTTGCGCAAGCTGTTTCCTGAAGCAACGCTGAATTCAGACGGCAGCAATATCGTCTTGACGCTTT CGGAAGAGGCGGTCAATAAAGTGCGTTCCGATGCGGTCAAACAGAACATCACTACCCTGCACAACCGTGTGAACGAGTTG GGCGTGGCCGAACCCGTCATCCAGCAGTCAGGTGCAGACCGTATCGTCGTGCAGCTTCCGGGCGTTCAGGATACTGCCAA GGCAAAAGACATCATCGGCCGTACCGCGACTTTGGAATTGCGTATGGTGGAGGACGATCCTGCCAAGTTGCGCGAGGCAT TGGAAGGCAACGTGCCGAGCGGTTATGAGCTGCTTTCAAGCGGCGGAGATCGTCCCGAAACTCTGCTAATCAGCAAACAG GTCGAGCTGACGGGCGACAACATCAACGATGCGCAACCGAGTTTCGACCAAATGGGCGCACCTGCCGTCAGTCTGAGCTT GGACAGCGCGGGCGGCAGCATTTTCGGCGAACTGACTGCCGCAAATGTCGGCAAACGCATGGCGATGGTTTTGATCGACC AAGGAAAATCCGAGGTTGTAACCGCGCCGGTTATCCGTACTGCCATTACCGGCGGACGCGTGGAAATTTCCGGAAGCATG ACGACAGCCGAAGCCAATGATACGTCTTTGCTGTTGCGTGCCGGTTCTCTTGCCGCGCCGATGCAGATTGTCGAAGAACG TACCATCGGTCCGTCTTTGGGTAAGGAGAACATCGAAAAAGGCTTCCATTCGACTTTATGGGGTTTTGCCATCGTTGCTG CATTCATGGTGGTTTACTATCGTCTGATGGGTTTCTTTTCTACCATTGCATTGAGTGCCAACATACTGTTCCTAATCGGT ATTTTGTCTGCTATGCAGGCAACGTTGACGTTACCGGGTATGGCCGCGCTGGCGTTGACTTTGGGTATGGCAATCGACTC CAACGTCTTGATTAACGAACGTATCCGCGAAGAATTGCGTGTCGGCGTGCCGCCGCAGCAGGCAATCAATCTCGGTTTCC AACACGCATGGGCGACCATTGTCGATTCCAACCTGACTTCGCTGATTGCCGGTATCGCGCTTTTGGTATTCGGTTCCGGC CCGGTACGCGGTTTTGCGGTCGTACACTGTTTGGGTATTCTGACTTCGATGTATTCGTCCGTCGTCGTATTCCGTGCGTT GGTCAATCTGTGGTACGGACGCAGACGCAAATTGCAGAATATTTCCATCGGTGCGGTATGGAAACCTGAAGCCGAAACTG CGGCAGGTAAGGAGTAA Protein sequence : MMNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIINEQTQSKVDAALQNAGIQTDGMFVVDNSLKVRFK DTETQLKARDVIENTLGEGYITALNLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGGIRRELR REKIRSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEATLNSDGSNIVLTLSEEAVNKVRSDAVKQNITTLHNRVNEL GVAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQ VELTGDNINDAQPSFDQMGAPAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITGGRVEISGSM TTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVAAFMVVYYRLMGFFSTIALSANILFLIG ILSAMQATLTLPGMAALALTLGMAIDSNVLINERIREELRVGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSG PVRGFAVVHCLGILTSMYSSVVVFRALVNLWYGRRRKLQNISIGAVWKPEAETAAGKE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 7e-96 | 41 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 1e-95 | 41 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 9e-96 | 41 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 7e-96 | 41 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 7e-96 | 41 |
