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Name : secD (Pnap_3885) Accession : YP_984102.1 Strain : Polaromonas naphthalenivorans CJ2 Genome accession: NC_008781 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 4139881 - 4141758 bp Length : 1878 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGAATCGTTATCCGGCCTGGAAGTACGCCCTTATCGTGGTCGTGCTGCTGATTGCAGCCCTGTACACGCTGCCCAATTT CTTTGGCGAAGCGCCCGCGGTGCAGGTCTCCAGCAGCAAGTCCACCGTCAAGGTGGACACGACGACGCTGGCCAGGGTCG AGCAGGCGCTGAAAGAGGCCAACATATCGGCCGATGGCATCACGCTGGAAGCGGGCTCCATCAAGGCGCGCTTTGGTGAT GTTGATACCCAGGGCAAGGCCAAGGACGCCATCCAGAAGGCGCTGACGCCCGATGCCGCCGATCCGGCCTATGTGGTCGC GCTCAACCTGCTGTCTCGCTCGCCCGCCTGGTTGACCTCGCTGAACGCCAACCCGATGTACCTGGGGCTCGATTTGCGCG GCGGCGTGCATTTCATGCTGCAGGTGGACATGCAGGCGGCGCTCACCAAACGCGCCGAATCGCTGGCCGGCGACATTCGC CTGTCGCTGCGCGAAAAGAACATCCGGCACGGCGGCATCGCCCGCAATGGCCAGGCCATCGAAATCCGGTTCCGTGACTC CGCCACGCTGACATCGGCCAAGAACCTGATCCAGGACCAGATTCCCGATCTGCAGATGGTCGAAGCGCCGGACGGCACCG ACTACAAGCTGACCGCGACCATCAAGCCCGAGGCCGCGCGCCGCATCCAGGACCAGGCGCTCAAGCAGAACATGGTGACG CTGCACAACCGCATCAACGAACTCGGCGTGGCCGAGCCGGTGATCCAGCAGCAGGGCATAGACCGCATCGTGGTGCAGCT GCCCGGCGTTCAGGACACGGCCAAGGCCAAGGACATTCTGGGCCGCACCGCCACGCTGGAAATGCGCCTGGTCGAGGACA GCGCCGAAGCCCGAGCCGCCGAGAGCGGCAGCGGCCCGGTGCCTTTTGGCTCGGAGCGCTTTTTCGAGCGCAACGGCCAG GCGGTGATCGTCAAGAAGCAGGTGATCCTGACCGGCGAGAACCTGACCGATGCGCAGCCGGGCTTTGATTCGCAGAACCA GCAGCCCAAGGTCGATCTGACGGTCGATGCCAAGGGCGGCCGCATCATGCGCGACACCAGCCGTGAAAACCTCAAAAAGC GCATGGCGATTTTGCTGTTTGAAAAAGGCAAGGGCGAAGTGCTGACCGCGCCGGTCATCCAGGGCGAACTGGGCAACCGG TTCCAGATTTCCGGCTCCATGAGCGTGAATGAAGCCAGCGACCTGGCGCTGCTGCTGCGTGCCGGCTCACTGGCCGCACC GATGGACATCATCGAGGAGCGCACCATCGGCCCGACGCTGGGCGCCGAAAACATCACCAAGGGTTTTCACAGCGTGTCCT GGGGCTTTGCGGTGATCGTGGCCTTCATGGCGACTTACTACATGCTGTTCGGCCTGTTTTCGGGCATTGCGCTGGCGGTC AACTTGCTGCTGCTGGTGGCCGTGCTGTCCATGCTGCAGGCCACCCTGACCCTGCCGGGCATGGCGGCGATGGCGCTGGC ACTCGGCATGGCGATTGACTCCAACGTGCTGATCAATGAACGCATCCGCGAGGAACTGCGCAACGGTGCCTCGCCGCAGG CCGCCATTCATGCGGGCTATGAGCGCGCCTGGGCGACGATCCTGGACTCGAACATCTCGACGCTGATTGCCGGCCTGGCC TTGCTCGCCTTTGGTTCCGGGCCGGTTCGCGGCTTTGCCGTGGTGCATTGCATCGGCATTCTGACCAGCATGTTTTCGGC GGTGTTTTTCTCGCGCGGTTTGGTCAACCTCTGGTATGGCCGGCAGAAAAAGCTCAAGACCGTGTCGATTGGCACGGTAT GGCGTCCGCCTTCAGAGGGCGGACTCGCCAAGTCATGA Protein sequence : MNRYPAWKYALIVVVLLIAALYTLPNFFGEAPAVQVSSSKSTVKVDTTTLARVEQALKEANISADGITLEAGSIKARFGD VDTQGKAKDAIQKALTPDAADPAYVVALNLLSRSPAWLTSLNANPMYLGLDLRGGVHFMLQVDMQAALTKRAESLAGDIR LSLREKNIRHGGIARNGQAIEIRFRDSATLTSAKNLIQDQIPDLQMVEAPDGTDYKLTATIKPEAARRIQDQALKQNMVT LHNRINELGVAEPVIQQQGIDRIVVQLPGVQDTAKAKDILGRTATLEMRLVEDSAEARAAESGSGPVPFGSERFFERNGQ AVIVKKQVILTGENLTDAQPGFDSQNQQPKVDLTVDAKGGRIMRDTSRENLKKRMAILLFEKGKGEVLTAPVIQGELGNR FQISGSMSVNEASDLALLLRAGSLAAPMDIIEERTIGPTLGAENITKGFHSVSWGFAVIVAFMATYYMLFGLFSGIALAV NLLLLVAVLSMLQATLTLPGMAAMALALGMAIDSNVLINERIREELRNGASPQAAIHAGYERAWATILDSNISTLIAGLA LLAFGSGPVRGFAVVHCIGILTSMFSAVFFSRGLVNLWYGRQKKLKTVSIGTVWRPPSEGGLAKS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 2e-82 | 41 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 1e-82 | 41 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 1e-82 | 41 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 1e-82 | 41 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 6e-83 | 41 |
