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Name : secD (Ajs_4005) Accession : YP_988185.1 Strain : Acidovorax sp. JS42 Genome accession: NC_008782 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 4260516 - 4262414 bp Length : 1899 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGAACCGTTATCCGGTCTGGAAGTACGCGATCCTGGTGATCGTGTTGCTCATTGGGGCCCTGTATACCCTGCCCAACTT CTTTGGCGAGGCGCCCGCGGTGCAGGTGTCGTCGGCCAAGGCCACGCTGAAGGTCGACGCCGCGGTCCAGCAGCGCGTCG AGGACGCGTTGAAAGCCGCCAACGTGGCCTCGGACTCCATCGTGTTCGACGGCAACTCGGTGCGCGCGCGCTTTGACACG CCGGACAACCAGCTCAAGGCCAAGGACGCGATCGAGAAGGCCCTGATCCCCGACCCGAGCGATCCTTCCTACATCGTGGC GCTGAACCTCGTGTCGCGCTCGCCCGACTGGCTCACCGCGCTGCATGCACGGCCCATGTACCTCGGCCTGGACCTGCGCG GCGGCGTGCACTTCATGCTGCAGGTGGACATGCAGGCGGCGATCACGAAGAAGATCGAGTCGTACGCAGGCGACCTGCGC AGCGCGCTGCGCGAGAAGAACATCCGGCACGGCGGCATCGGCCGCGAAGGGCAGGCCGTGGACATCCGCGTGCGCGACGA GGCCACGCTCACGGCGGCACGCAACCTGATCGCCGACCAGTTCCCGGACCTGGCGGTCGTGAGCAGCGCCGACGGCGACG GTATGCGCCTGCGCGCCACCATCAAGCCCGAGGCCCTGCGCAAGGTGCAAGAGCAGGCCTTGAAGCAGAACATGGTCACG CTGCACAACCGTATCAACGAACTGGGCGTGGCCGAGCCGGTGATCCAGCAGCAGGGCCTGGACCGCATCGTGGTGCAGCT GCCCGGCGTGCAGGACACGGCCAAGGCCAAGGACATCCTGGGCCGCACCGCCACGCTGGAAGTGCGCATGGTGGACGAGG GCACCGAGGCGCGCGCCGCCGAAATGGGAACGGGCCCCGTGCCGTTCGGTGCCGAGAAATACCTGGACCGCAATGGCCAG GCCGTGATCGTGAAGAAGCAGGTCGTGCTGACCGGCGAGAACCTCACCGACGCGCAGCCAGGATTCGACGGCCAGACCCA GGAGCCCACCGTGAACCTCACGCTGGACGCCAAGGGCTCGCGCATCTTCAAGGACATCACGCGCGAGAACGTGGGCAAGC GCATGGCCATCGTGCTGTTCGAAAAGGGCAAGGGCGAGGTGGTGACCGCGCCCGTGATCCGCAGCGAGATTGGCGGTGGT CGCGTGCAGATCTCCGGCCGCATGACCACGGCCGAGGCCAACGACACCGCACTGCTGCTGCGCGCCGGCTCGCTGGCCGC GCCCATGGAGATCATCGAGGAATACACCATCGGCCCGAGCCTGGGTGCCGACAACATCGAACGGGGTATCCAGTCGGTGG TCTGGGGCATGGTGGCCATCGCGGCCTTCATGTGCGTGTACTACAGGCTGTTCGGCGTGTTCTCCACGATCGCGCTGGGC GTGAACGTGCTGCTGCTGATCGCCATCCTGTCGATGCTGCAGGCCACGCTGACCCTGCCCGGCATCGCCGCCATGGCCCT GGCGCTGGGCGTGGCCATCGACTCCAACGTGCTGATCAACGAGCGCATCCGCGAGGAACTGCGCGCTGGCGTGGCCCCGC AGGCGGCGATCGCCACGGGCTACGAGCGCGCCTGGGCCACCATCCTGGACTCCAACGTCACCACGCTGATTGCGGGCCTG GCGCTGCTGGCCTTCGGCACGGGGCCGGTGCGCGGCTTTGCCGTGGTGCACTGCATCGGCATCCTGACCAGCATGTTCTC GGCGGTGTTCTTCTCGCGTGGCCTGGTCAACCTCTGGTATGGCCGCAAGAAGAAGCTCAAGAGCGTGTCCATCGGCCAGG TGTGGAAGCCCGAGGGCGATGAGCACCGCTCGGTGGCTGCCCGCGGCAACAGCAACTAA Protein sequence : MNRYPVWKYAILVIVLLIGALYTLPNFFGEAPAVQVSSAKATLKVDAAVQQRVEDALKAANVASDSIVFDGNSVRARFDT PDNQLKAKDAIEKALIPDPSDPSYIVALNLVSRSPDWLTALHARPMYLGLDLRGGVHFMLQVDMQAAITKKIESYAGDLR SALREKNIRHGGIGREGQAVDIRVRDEATLTAARNLIADQFPDLAVVSSADGDGMRLRATIKPEALRKVQEQALKQNMVT LHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDILGRTATLEVRMVDEGTEARAAEMGTGPVPFGAEKYLDRNGQ AVIVKKQVVLTGENLTDAQPGFDGQTQEPTVNLTLDAKGSRIFKDITRENVGKRMAIVLFEKGKGEVVTAPVIRSEIGGG RVQISGRMTTAEANDTALLLRAGSLAAPMEIIEEYTIGPSLGADNIERGIQSVVWGMVAIAAFMCVYYRLFGVFSTIALG VNVLLLIAILSMLQATLTLPGIAAMALALGVAIDSNVLINERIREELRAGVAPQAAIATGYERAWATILDSNVTTLIAGL ALLAFGTGPVRGFAVVHCIGILTSMFSAVFFSRGLVNLWYGRKKKLKSVSIGQVWKPEGDEHRSVAARGNSN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 3e-105 | 41 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 3e-105 | 41 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-105 | 41 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 4e-105 | 41 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 3e-105 | 41 |
