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Name : secD (Hhal_1696) Accession : YP_001003262.1 Strain : Halorhodospira halophila SL1 Genome accession: NC_008789 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1852345 - 1854201 bp Length : 1857 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : TTGAATCGCTATCCGCTCTGGAAATACCTGCTGGTGGTCGCCGTCCTGGTGGTCGGCGGCCTCTTCGCGCTGCCCAACCT CTTCGGTGAGGATCCCTCGGTGGTGATCACCACCGGCGACGACGAGGTACCGAGCGAGGAAGTCCAGTCCGACGTCCTCG GCTTCCTCGAGGAAGAGGGCTACAAGCCGCTCTCCGCCGAGGTACTGGAGGGGCAGTGGGTGCTTCGCTACGGCTCCACC GACGAGCAGATGCGGGCCTCGGACCTGATCTCGGCCAAGCTCGACCGAGAGTACTCCGTGGCCATGACGCTGGTGCCGGC GACCCCGCAGTGGCTGCGCGCCATGGGGGCGGAACCCATGTTCCTCGGCCTTGATCTGCGCGGCGGCGTGCACTTCCTGC TTCAGGTCGATATCGACGCCATGGTCGGCGAGACCATGGAGGGGCACCAGCAGGATATCCGGACGCTGTTCCGGGAGGAG CGGATTCGCTTCTCGGCGCTGGAGGTGACCGACGAGCAGCAGATCCGCATGGCGTTTGCCGACACGGACCTGCGCGCGCG GGCCCTGGAGGCGCTCGAGGAGCATATCGAGGGCCTGAACTACAGCGAGGAAGAGGACGAAGACACCTACACCCTGATCG CCTCCATGGACGAGGAGGAGCTTCAGGAGATGAAGGACCTGGCGGTCCAGCAGAACATCACCACGCTCCGCAACCGCGTG GACGAGCTGGGTGTCGCCGAGCCGGTGATTCAGCGCCAGGGCGCGGATCGCATCGTGGTCCAGCTGCCCGGTATTCAGGA CCCCGGGCAGGCCAAGGAGATCCTCGGCGCCACAGCGACCCTGGAGTTTCGGTTTGTCGATCACGCCAACTTCCCCTTCA CCGGCGATCCGGACGATCCGCCGGAAGGCTCCGAGGTCTTCCCTCAGCGCGATGGCGGCTATGTCGCGCTCGAGCGCCAG CGCATCCTCTCCGGCGATCGCATCATCGATGCCTCCTCCGGGTTCGATCAGGAGAGTGGTTCGCCCGAGGTGAACATCCG ACTGTCCGGAACCGGCGGGCGCATCATGAACCGGGCCACCCGGGACCGGGTCGGCGACCATATGGCGGTGCTCTTCCAGG AGCGGATCTCCGAGACGCAGATGGTCGACGGCGAGCCGGAGCGGGTGATCCGCGAGCTTGAGGAGGTCATCTCGGTCGCG CGGATCCGCGAGGGGCTGGGTAGTCGCTTCCGCATCACCGGGCTCGATTCCAGCCAGGAGGCCAGTAACCTGGCCCTGCT GCTGCGCGCCGGTGCCCTGGCCGCGCCCATCGACATCGTCGAGGAACGCACCATCGGGCCGAGCCTGGGTGCCGAGAACG TCGAGCGGGGCTTCATGGCGGTGGTGATCGGATTCCTGCTGGTGATCGCCTTCATGGCGCTCTACTACCGCACCTTCGGT CTGGTGGCTAACCTGGCGCTGCTCAGCAATCTGGTGATCATCGTCGCCGTGCTCTCCATGCTGCAGGCGACCCTGACGCT GCCGGGCATCGCCGGGATCGTGCTGACCGTGGGGATGGCGGTGGACGCCAACGTGCTCATCTTCCAGCGCATCCGCGAGG AGCTGAAGGCCGGTGCGCCGATCCAGACCGCCATCGATGCCGGCTACGGCAAGGCGCTGTCGACCATCGCCGACGCCAAT GTCACCACGCTGATCGCCGCCCTGGTGCTGTTCCTCTTTGGCACCGGACCGGTCCAGGGCTTCGCCGTGACGCTGGCCAT CGGTCTGGCCACGTCGATGTTCACCGCCATTGTCGGCACGCGGGCCGTGATCAACCTGATCTACGGCGGGCGCAAGGTCT CGGAGCTCAAGATCTAG Protein sequence : MNRYPLWKYLLVVAVLVVGGLFALPNLFGEDPSVVITTGDDEVPSEEVQSDVLGFLEEEGYKPLSAEVLEGQWVLRYGST DEQMRASDLISAKLDREYSVAMTLVPATPQWLRAMGAEPMFLGLDLRGGVHFLLQVDIDAMVGETMEGHQQDIRTLFREE RIRFSALEVTDEQQIRMAFADTDLRARALEALEEHIEGLNYSEEEDEDTYTLIASMDEEELQEMKDLAVQQNITTLRNRV DELGVAEPVIQRQGADRIVVQLPGIQDPGQAKEILGATATLEFRFVDHANFPFTGDPDDPPEGSEVFPQRDGGYVALERQ RILSGDRIIDASSGFDQESGSPEVNIRLSGTGGRIMNRATRDRVGDHMAVLFQERISETQMVDGEPERVIRELEEVISVA RIREGLGSRFRITGLDSSQEASNLALLLRAGALAAPIDIVEERTIGPSLGAENVERGFMAVVIGFLLVIAFMALYYRTFG LVANLALLSNLVIIVAVLSMLQATLTLPGIAGIVLTVGMAVDANVLIFQRIREELKAGAPIQTAIDAGYGKALSTIADAN VTTLIAALVLFLFGTGPVQGFAVTLAIGLATSMFTAIVGTRAVINLIYGGRKVSELKI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 8e-108 | 47 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 7e-108 | 47 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 6e-108 | 47 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 6e-108 | 47 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 6e-108 | 47 |
