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Name : secD (YE3164) Accession : YP_001007345.1 Strain : Yersinia enterocolitica 8081 Genome accession: NC_008800 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 3436423 - 3438270 bp Length : 1848 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : GTGTTAAACCGTTATCCTTTGTGGAAGTATCTGATGTTGATCGTGGTGATCTTCGTCGGTCTGCTATACGCACTTCCCAA CCTTTATGGTGAGGATCCGGCTGTTCAAATCACTGGTGCGCGAGGAATCGCCGCCAGTGAAACAACGCTGGTCCAAGTCC GTGACGTTTTAGAAAAAGACAACATAGCGAGCAAGTCTATTGCACTGGAAAATGGTGCAATCCTGGCTCGCTTTAGAGAT CCTGACGTCCAGCTGCGCGCTCGTGAAGCACTGATGGCTGCGATGGGGGACAAATACGTAATCGCGCTGAACCTTGCTCC AGCAACCCCTTCGTGGCTTGCAAAATTGGGTGCAGAGCCGATGAAGCTTGGTCTTGACCTGCGTGGTGGTGTGCACTTCT TGATGGAAGTGGATATGGACACTGCGCTTGGCAAGTTACAAGAGCAAACGATGGATACTCTGCGCAGTGATTTGCGTGAG AAAAATATCCCGTATGCGACGGTGCGTAAACTGGATAATTATGGTGTTGAAGTGCGTTTCCGCGATGATAAAACTCGCGA TGATGCTATCAGCTACCTTTCTCCTCGCCACCGTGATCTGGTGATTGGCTCCAATGGCAGCAATACCTTAAAAGCTGTGA TGAGTGATGACCGTCTGCGGGAAGCGCGCGAATATGCCGTTCAGCAAAACATTACTATTCTGCGTAACCGGGTTAACCAA TTAGGTGTAGCCGAGCCGTTGGTTCAGCGCCAGGGTTCAGATCGTATTGTCGTTGAGTTGCCGGGTATTCAGGATACTGC ACGTGCCAAAGAGATTCTTGGTGCGACGGCAACACTTGAGTTCCGTTTGGTCAATAGCAATGTTGATGCTTCTGTTGCTG CCTCCGGTCGTGTACCGGGCGATTCTGAAGTCAAAAACACGCGTGAAGGCCGCCCGGTTGTCTTGTACAAGCGCGTTATC CTGACCGGTGACCATATTACCGACTCCACTTCCAGCACTGACGAATATAACCAGGCTCAGGTTAATATCTCGCTCGATAG CGCCGGTGGTTCTGCTATGTCTAATTTTACCAAAGACAATATCGGCAAGCCGATGGCGACTTTGTTTGTAGAATATAAAG ACAGCGGTAAAAAAGATGCTAATGGCCGAGCGGTTCTGGTTAAGCAGGAAGAAGTTATCAACGTCGCGACCATCCAGTCT CGCTTGGGTAACAGTTTCCGCATTACCGGTATTGATAATCCGGCTGAAGCTCGTCAGCTTTCTCTATTGCTGCGTGCTGG TGCATTAATTGCACCTATCCAGATTGTGGAAGAACGCACTATTGGGCCAACTTTGGGTTCTCAGAATATTACCCAAGGTT TGGAAGCTTGCTTGTGGGGCTTGGCGGTTTCTATCCTGTTTATGGTGGTTTACTACCGTAAATTTGGGGTGATTGCCAGT ACTGCGCTGTTGGCGAACCTGGTGTTGATCGTGGGCGTGATGTCTCTGTTACCGGGGGCGACATTAACCATGCCGGGTAT TGCCGGGATAGTGTTGACCCTGGCGGTAGCAGTTGATGCTAACGTTCTGATTAACGAGCGAATAAAAGAAGAGTACAAGA ACGGGCGGACGATCCAGCAAGCGATTCATGAAGGGTATAAAGGTGCCTTCTCAAGTATCGTCGATGCGAACGTAACGACA CTTATCACAGCCATTATTCTTTACGCTGTGGGGACCGGTTCGATTAAAGGCTTTGCCATTACAACGGCAATCGGTGTTGT AACGTCAATGTTCACCGCAATAGTCGGTACTCGTGCCATCGTCAACCTGCTTTACGGCGGCAAGCGCATTAACAAGCTGT CTATTTGA Protein sequence : MLNRYPLWKYLMLIVVIFVGLLYALPNLYGEDPAVQITGARGIAASETTLVQVRDVLEKDNIASKSIALENGAILARFRD PDVQLRAREALMAAMGDKYVIALNLAPATPSWLAKLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRSDLRE KNIPYATVRKLDNYGVEVRFRDDKTRDDAISYLSPRHRDLVIGSNGSNTLKAVMSDDRLREAREYAVQQNITILRNRVNQ LGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNSNVDASVAASGRVPGDSEVKNTREGRPVVLYKRVI LTGDHITDSTSSTDEYNQAQVNISLDSAGGSAMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINVATIQS RLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNITQGLEACLWGLAVSILFMVVYYRKFGVIAS TALLANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEYKNGRTIQQAIHEGYKGAFSSIVDANVTT LITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 9e-127 | 49 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 2e-126 | 48 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 4e-126 | 48 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 2e-126 | 48 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 2e-126 | 48 |
