Gene Information

Name : BMA10229_0420 (BMA10229_0420)
Accession : YP_001024242.1
Strain :
Genome accession: NC_008835
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 423973 - 424467 bp
Length : 495 bp
Strand : -
Note : identified by match to protein family HMM PF04542; match to protein family HMM PF08281; match to protein family HMM TIGR02937

DNA sequence : 
TTGCGTCTGCAGCGGGAGATCGCTGCGCTCTATACCGGTCATCGCGGCTGGCTGCACGGCTGGCTGTCGAAGAAGCTCGG
CTGCGGCGAGCGCGCGGCCGATCTGGTTCACGACACGTTCATCCGCCTGCTCGCACGCGACGAGCCGATCGACGCGGCCG
AGCCGCGCGCGTTCCTGACGACCGTCGCGCAGCACGTGCTGTACAACCACTGGCGGCGCGAGCGGCTCGAGCGCGCGTAT
CTCGACGCGCTCGCGCAATGGCCGGAGGCGGTCGCGCCGTCGCCGGAGACACGCGCCGTCCTGTTCGAGACGCTCGTCGA
GGTCGACCGGATGCTCGACGGGCTGCCCGCCGTCGTTCGCCGCGCGTTCCTGCTCGCGCAGCTCGACGGCATGACGCACG
CGCAGATCGCGGCCGAGCTGCGCGTGTCGCTCGCGACCGTCAAGCGCTACCTGGTGAAAGCGGGCGCGCAGTGCTACTTC
GCGATCGCCGCATGA

Protein sequence : 
MRLQREIAALYTGHRGWLHGWLSKKLGCGERAADLVHDTFIRLLARDEPIDAAEPRAFLTTVAQHVLYNHWRRERLERAY
LDALAQWPEAVAPSPETRAVLFETLVEVDRMLDGLPAVVRRAFLLAQLDGMTHAQIAAELRVSLATVKRYLVKAGAQCYF
AIAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 3e-32 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BMA10229_0420 YP_001024242.1 ECF subfamily RNA polymerase sigma factor VFG1049 Protein 1e-32 47