Gene Information

Name : Rsph17029_3118 (Rsph17029_3118)
Accession : YP_001044990.1
Strain :
Genome accession: NC_009050
Putative virulence/resistance : Virulence
Product : ATPase
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 131247 - 133916 bp
Length : 2670 bp
Strand : -
Note : PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: rsp:RSP_3474 hypothetical protein

DNA sequence :
ATGCCGCGGGGCTCGCAGGAAACCGTCAAGCGGAAGGAACTGGTGGCGAAGCTGAACCCGACCTGTCTCGCGGCCTTCTC
GGCGGCGGCTCAGGCGGCGAAGGCGCGCGGCAACCCCTATGTGGAGCTGGTCCATCTGATCGAGGCGCTGCTCGCCGCGG
ATCGGTCCGACATGGCGCTGCTGATGCGCGCGGCAGGCTGCGATGCCGGCCGGCTCTCGGCCGATGTGGCCCGCGCGGTG
GACGTGCTGCCACGCGGGGCGAGCGCGGTGGAAGAATTTTCCGACCATCTCTTCCATGCCATCCGCGAGGGCTGGACCTT
CGGCAGCCTGCGGTTCGGCGACGACCGCGTGCGCTCGGGATACCTCCTGCTTGGCGCGCTGCGGGTGCCCGTGCTCGAGG
CGCTGCTCATGCGGATCAGCGGCGCCTTCGGGCAGGTGGATGCAGAGTCTCTTTCCGAGACGTTCCGCGATCTGACGCAG
GGCTCGGCCGAGGGCGATGCCGCGCCGCCCCCCGCGCGGCCGGGCGCGGCCGACGGCTCCGCGCTCGCCCGCTATGCGAC
CGATCTGACGGCGCGGGCGCGGGAGGGGCGGCTCGATCCGGTCGTGGGGCGCGATCCCGAGATCCGGCAGATCATCGACA
TCCTGATGCGGCGGAGGCAGAACAATCCGATCCTCACCGGCGAGGCCGGGGTGGGCAAGACCGCCGTCGTCGAGGGCCTT
GCGCTGCGGCTTGCCCGCGGGGACGTGCCGCCGCCGCTGCGTACGGTGACCCTGTGGATGCTCGATCTCGGGCTGATGCA
GGCGGGTGCCAGCATGAAGGGCGAGTTCGAGAAGCGGCTGAAGAGCGTGATCGACGAGATTCAGGCCTCGGACGCTCCGG
TGATCCTCTTCATCGACGAGGCCCATACGCTGATCGGCGCGGGCGGCGCGGCGGGGACGGGGGACGCGGCCAATCTTCTC
AAACCGGCACTGGCACGGGGAGAGCTGCGCACCGTCGCCGCCACCACCTGGGCCGAATACAAGCAGCATATCGAGCCCGA
CCCGGCGCTGACCCGCCGCTTTCAGGTGGTGCGGATCGAGGAGCCCTCGGAAGAGGCCGCGATCCGCATGTGCCGCGGCG
TGGCCGCCGTGCTGGAGCGCCATCACCGGGTCGAGATCCTCGACGAGGCGGTGGGGGCGGCGGTGCGGCTGTCGCATCGC
TACCTGCCGGCCAGGCAATTGCCGGACAAGGCGATTTCCCTGCTCGACACCGCCTGCGCACGCGTCGCCGTCTCGCAGCA
TGCGACGCCGGCGGAGGTCGAGGACATCGACCGCCGCGCGCAGGCGCTCGAGATCGAGGCGGGCATCCTCGAGCGCGAGG
AGGCCGTGGGCATGGATGTGACGGCGCGCCGCGGCGACGTCGAGGCGGCGCGGACCGCCGTCGCGGCCGACCGGGCTGCG
GCGGAGACGCGCTGGGAGGCCGAGAAGGCGCTGGTGGCCGAAATTCTCGAGTTGCGCGCCCGGCTGCGGGCAGAGGGCGA
TGCGCTGGACGGCACACCGCCGCAGGCCGCCGAGGAGGCCGAGCCGCCCAGGGACGACCGTGCGGCCCTCCTCGACCGCC
TGCGGCGTTGCAGCCGGGATCTCGCCGAGGCGCAGGGGGAGCGGCCGCTGATCCTGCCGACGGTCGACCGTCAGGCGGTC
GCCTCGGTGGTGCAGGACTGGACCGGCATCCCGATGGGGCGGATGCTGGCCAGCCGCAACGAACGCGCGCTCGGCCTTGC
GGACCTGCTGGCCCGGCGTGTCGTGGGACAGGATCATGCGATGGAGGCCATCGCGAGCCGGATCCGGACCGCGCAGGCGG
GGCTCGGGCCGCCGGAGAAGCCGCTCGGGGTCTTCCTGCTCTGCGGACCCTCGGGCGTCGGCAAGACCGAGACGGCGCTG
GCCTTGGCCGAACAGCTGCACGGTGGCGAGCAGGCTCTCATCACGATCAACATGAGCGAGTTTCAGGAGGCGCACACGGT
CTCGACGCTGAAGGGCTCGCCCCCGGGCTATGTGGGCTATGGCAAGGGCGGCATCCTGACGGAGGCGGTGCGGCGAAAAC
CCTATTCGGTGATCCTGCTCGACGAGGTCGAGAAGGCGCATCCCGACGTCCATGAAATATTCTTTCAGGTGTTCGACAAG
GGAAGGATGGACGACAGCGAAGGGCGGCAGATCGATTTCCGCAATACGGTGATCCTGCTGACCTCGAACGTCGGCACCGA
CGAGATCGTGGAGGCTGCGGGGCAGGATCTGGCAGAAGTGTCGGCCGCCCTCCGCGCGCCGCTTCTACAGGTCTTTCCGG
CCGCGCTGCTGGGGCGGATGATCGTGCTGCCGTTCCTGCCGCTCTCGGACCGGATGATCGCGGCCATCGCGGGGCAGAAG
CTCGAGGCCATTGCCCGGCGGCTGAAGGCAGGGCACGGCGCCGAGTTGGTTCTGGGCGAGGGCGTGCTCGAGACGATCCG
CGCCCGCTGCACCGAGGTCGAGTCGGGCGGACGGATGATCGATGCGATCCTGAGCGGCACCCTGCTGCCGGAACTGAGCC
GCAAGCTGCTCGAGCGCCAGCTCGCGGGGGCGGCCTTCAGCCGGGTGACCCTCACCGGCGGGCCCGCGGGCTTTTCCTAT
GCGTTCGAGACGGAGGCGGATCATGCATGA

Protein sequence :
MPRGSQETVKRKELVAKLNPTCLAAFSAAAQAAKARGNPYVELVHLIEALLAADRSDMALLMRAAGCDAGRLSADVARAV
DVLPRGASAVEEFSDHLFHAIREGWTFGSLRFGDDRVRSGYLLLGALRVPVLEALLMRISGAFGQVDAESLSETFRDLTQ
GSAEGDAAPPPARPGAADGSALARYATDLTARAREGRLDPVVGRDPEIRQIIDILMRRRQNNPILTGEAGVGKTAVVEGL
ALRLARGDVPPPLRTVTLWMLDLGLMQAGASMKGEFEKRLKSVIDEIQASDAPVILFIDEAHTLIGAGGAAGTGDAANLL
KPALARGELRTVAATTWAEYKQHIEPDPALTRRFQVVRIEEPSEEAAIRMCRGVAAVLERHHRVEILDEAVGAAVRLSHR
YLPARQLPDKAISLLDTACARVAVSQHATPAEVEDIDRRAQALEIEAGILEREEAVGMDVTARRGDVEAARTAVAADRAA
AETRWEAEKALVAEILELRARLRAEGDALDGTPPQAAEEAEPPRDDRAALLDRLRRCSRDLAEAQGERPLILPTVDRQAV
ASVVQDWTGIPMGRMLASRNERALGLADLLARRVVGQDHAMEAIASRIRTAQAGLGPPEKPLGVFLLCGPSGVGKTETAL
ALAEQLHGGEQALITINMSEFQEAHTVSTLKGSPPGYVGYGKGGILTEAVRRKPYSVILLDEVEKAHPDVHEIFFQVFDK
GRMDDSEGRQIDFRNTVILLTSNVGTDEIVEAAGQDLAEVSAALRAPLLQVFPAALLGRMIVLPFLPLSDRMIAAIAGQK
LEAIARRLKAGHGAELVLGEGVLETIRARCTEVESGGRMIDAILSGTLLPELSRKLLERQLAGAAFSRVTLTGGPAGFSY
AFETEADHA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 1e-158 49
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 1e-129 44
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 1e-129 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rsph17029_3118 YP_001044990.1 ATPase VFG2076 Protein 0.0 58
Rsph17029_3118 YP_001044990.1 ATPase VFG2084 Protein 3e-139 44