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Name : secD (APL_1067) Accession : YP_001053764.2 Strain : Actinobacillus pleuropneumoniae L20 Genome accession: NC_009053 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1234849 - 1236696 bp Length : 1848 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : GTGTTAAATCGTTTCCCATTATGGAAGAACCTGATGATTATTATTATCGTACTCATCGGGGGCTTATATGCTCTTCCTAA CCTATACGGCGAAGATCCGTCGGTTCAAATTTCCGGAACCCGCGGTCAGCAAGCGACGAGCGAAACGCTCGTTCAAGTAC AGGGAACGTTGTCGTCAATGAATATCACCCCGAAATCAGCCGTTCTCGAGAACGGCTCGATTTTAGTGCGTTTAGAAAAA GATGAACAACAATTACCTGCCAAAGAAAAAATTTCCGAAGTCTTAGGCGATAAATTTTCCGTAGCGTTAAACCTTGCGCC GGCAACGCCGGCTTGGCTAACCGACATCGGCGGTAACCCGATGAAACGAGGCTTGGACTTACGCGGCGGCGTTCGCTTCC TGATGGAAGTGGATATGAACACCGCATTGGCTAAACAACAAGAAAATCTACAAGACAGTTTACGTACGGAACTTCGTAAA GAAAAACTGCAATATAAAGCGGTTAAAAAAGGCGAAAATTTTGCCACGGTAATTGAATTTGCCGATGAGGAAACCGCCAA TAAAGCCATTCGTTATATTCGTCGCGTTCACACTGCTCTTGAAGCCGCTTCTATTAGCCCGACAGAGATTTCATTCAGCC CGTCGGAAAGCGGACTCGCCACCTCACGCGATACGGCGATTGAACAAAACTTATCCATCTTACGTAAGCGTGTGGAAGAA CTCGGCGTGTCGGAGCCGACTATCCAGCGTCAAGGTGCGGATCGTATCGTGGTTGAATTACCGGGTGTGCAAGATACCGC GCGTGCTAAAGAACTTCTCGGTGCAACAGCAACGCTTGAATTCCGTTTAGTAAATGCGGAAGCCAGCCCAGAATCTGCAG CCAGAGGTATTGTACCGGCGGATTCCGAAATTCAATATACGCGTGACGGTAATCCCGTCGTGCTACGTCGTAAACCGTCT TTAGGAGGTGAGCATATTATTGATGCGACTTCCGGTAAAGACGAACGCGGTTTACCGCAAGTAAGCATCAATCTTGATGC GGAAGGCGGTACGATGATGGCGGATATTACCAAAAGTGCGGTAGGCAAACCGATGGCGACCCTTTACAGCGAGTTTAAAG ACTCCGGTCGTAAAGACGCTAACGGTAAAGTGATCTTAGAAAAACACGAAGAAGTAATTAACGTCGCAACGATTAACTCT CGTCTTGGTAGCCAATTCCAAATTACCGGGATCGATTCGCCGGCAGAAGCGCAAAATCTTGCGGTACTGTTACGCTCGGG TGCATTGATTGCACCGATTGTGATTGTGGAAGAACGTACTATCGGCGCTTCTTTAGGTGCGGATAACGTTGCGAAAGGGA TGGAAGCCGGTATGTACGGTTTAATCTTAACCATCGCATTCTGTTTAATTTACTACAAAATGTTCGGAGTGTTTGCGGCA ACGGCTCTGACGGCAAATATGGTGCTGACTATCGGTTTAATGTCATTAATCGGTGCAACACTGACTATGCCGGGAATTGC CGGTATCGTACTGGCGGTAGGTATGTCGGTCGATGCAAACGTATTGATTTACGAACGTATTAAAGAAGAACTGCGTAACG GACGATCAATCCAACAAGCGATTCACGAAGGTTATAACGGTGCGTTCACCTCGATTTTCGACTCGAACTTAACCACGATT TTAACCTCGTTAGTGCTGTATGCGGTCGGTACCGGTCCGGTAAAAGGCTTTGCAATTACGCTTGCACTTGGGGTAATGAT TTCGATGTTTACCGCAATTACCGGTACTCGTATGCTCGTAAACTGGGTGTACGGCGGCAATAAACGTGTGAAAAAACTTT GGATTTAA Protein sequence : MLNRFPLWKNLMIIIIVLIGGLYALPNLYGEDPSVQISGTRGQQATSETLVQVQGTLSSMNITPKSAVLENGSILVRLEK DEQQLPAKEKISEVLGDKFSVALNLAPATPAWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRK EKLQYKAVKKGENFATVIEFADEETANKAIRYIRRVHTALEAASISPTEISFSPSESGLATSRDTAIEQNLSILRKRVEE LGVSEPTIQRQGADRIVVELPGVQDTARAKELLGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPS LGGEHIIDATSGKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEEVINVATINS RLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKMFGVFAA TALTANMVLTIGLMSLIGATLTMPGIAGIVLAVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTI LTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLWI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 3e-122 | 46 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 3e-122 | 46 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 2e-122 | 46 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 9e-122 | 46 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 3e-122 | 46 |
