Gene Information

Name : BURPS1106A_A2829 (BURPS1106A_A2829)
Accession : YP_001076858.1
Strain :
Genome accession: NC_009078
Putative virulence/resistance : Virulence
Product : putative ATP-dependent Clp protease, ATP-binding subunit ClpB
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 2770486 - 2773152 bp
Length : 2667 bp
Strand : -
Note : identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724

DNA sequence :
ATGTCCGATATCGGCCGAGTGACCTTGTTTGGAAAACTGAACACTTTTCTCTACGAGACCCTGGAGCAGGCGACCGGCTT
TTGCCGGCTGCGCGGCAATCCCTATGTCGAGCTCGCGCACTGGCTGAACCAGATGCTCCGGCGCCCGGACAGCGACGTGC
ACCGGATCCTGCGCCGCTTCGACATCGACGCGGCGGCGATCGACCGCGGGATCGTTTCGGCGCTCGACCGGCTGCCGCGC
GGCGCGGGTTCCGTGTCCGATCTGTCCGCGCACATCGATGATGCGGTCGAACGCGCATGGGTGTACGCGACGCTCAAGTA
CGACGCGGCGCAGATTCGCGGCGCGGTGCTGCTGCTCGCGCTCGTGAAGACGCCGCAGCTGCGCAACGTGCTGTACGCGA
TCGCGCGGGACTTCGAGCGCATCGTGCCTGACGTGCTTGCCGACGAGCTCGAACGGATCGTCGCAGGCTCGCCGGAGGCG
CCGTCGCCCGCCGCGCGCGCGGCGGCGGGGGCGATCGGCGACGCGGGGGCGGCGCCGTCCGCCGCGCGCGAAGGCTCGGC
GCTCGCGCGCTACGCGATCGATCTGACCGCGCGTGCGCGCGCGGGCGAGATCGATCCGGTGGTCGGCCGCGACGGCGAGA
TTCGGCAGATCGTCGACATCCTGCTGCGCCGCCGGCAGAACAATCCGCTGCTCGTCGGCGAGGCGGGCGTCGGCAAGACC
GCGGTCGCCGAAGGCTTCGCGCTGCGCATCGTCGCGGGCGACGTGCCGCCGCCGCTGCGCGACGTCGAACTGTATCTGCT
CGACATCGGCCTGCTGCAGGCGGGCGCGAGCGTGAAGGGCGAATTCGAGAGCCGCCTGCGCGGCGTGATCGACGAGGCGA
GTTCGAGCGAGCGGCCCGTCATTCTGTTCATCGACGAGGTACACACGCTCGTCGGCGCGGGCGGCGCGGCGGGCACGGGC
GACGCGGCGAACCTGTTGAAGCCCGCGCTCGCGCGCGGCCTGCTGCGCACGATCGGCGCGACGACGTGGTCCGAATACAA
GCAATACATCGAGAAGGACCCGGCGCTCACGCGGCGCTTCCAGCTCGTGCAGGTGCGCGAGCCGGAGGAGGGCGCGGCGC
TGGCGATGCTGCGCGGGCTCGCCGCGAAGCTGGAGGCGCACCATCGCGTGCTCGTGCTCGACGATGCGCTGCAGGCGGCC
GTCACGCTGTCGCATCGCTACATTCCCGCGCGGCAGTTGCCGGACAAGGCGATCAGCCTGCTCGACACCGCGTGCGCGCG
CGTCGCGGTCAGCCAACACGCGGTGCCCGCGCCGATCGAGGACGTGCGGCGGCGGATCGATAGCCTGCGCGTCGAGCGCG
AGCTGATCGCGCGCGAGTGCGCGCTCGGCGCGGGCGATGCGCAACGGCTCGATGCAATCGATGCATCGATCGCCGGCGAA
CAGACCACGCTCGATGCGCTCGACGCGCGCTGGCAGGCGGAGCGCGACGCGCTCGGCAAGATCGTCGACTGGCGGGCCTC
GCTGCTGGCCGACGATTCTTCGCGCGTGCTCGATGAGGCGGCGCGCGCGGACGTGCAGGCGAAGCTCTCGGCCGCGCTGC
GCGCGCTCGCCGAATTGCAGGGCGAGACGCCGCTCGTGCTGCCCGCGGTCGATACGCACGCGGTGGCCGCCGTGGTGTCC
GACTGGACCGGCATCCCGCTCGGGCGGATGGTGCGCGACGAGATGCAATCGGTGCTGAAGCTCGCCGAGACGCTCGCCGA
GCGCGTGGTCGGCCAGCCGCACGCGGTCGGGCTGATCGCCGAGCGCATTCAGACCGCGCGCGCGCGGCTCGACGATCCGG
CCAAGCCGCACGGCGTGTTCCTGCTGTGCGGGCCGTCCGGCGTCGGCAAGACCGAGACGGCGCTCGCGCTCGCCGAGACG
CTGTACGGCGGCGAGCACAACGCGATCACGATCAACATGAGCGAGTTTCAGGAGGCGCACACCGTATCGACGCTCAAGGG
CGCGCCGCCCGGCTACGTCGGCTACGGACAGGGCGGGGTGCTGACCGAGGCGGTGCGGCGGCGGCCGTACAGTGTCGTGC
TGCTCGACGAAATCGAGAAGGCGCACCGCGACGTGCACGAGATCTTCTTTCAGGTGTTCGACAAGGGCTGGATGGAAGAC
GGCGAGGGGCGCTATATCGACTTTCGCAACACGGTGATCCTCCTCACGTCGAACGTCGGTTCCGAGCGCGTGATGCAGCT
GTGCCGCGATCCGCAGCGCCTGCCCGATGCGCAGACCTTGACCGATGCGCTGCGCGCGCCGCTGCGCGAGGTGTTTCCCG
CCGCGTTGTTGGGACGCCTGACGGTCGTTCCGTACTACCCGCTCACCGACGAGATGCTCGCGCGGATCGTCGCATTGCAG
CTCGCGCGCATCGAGCGGCGCATCGAAGCGCACCACGGCATCGCGTTGCGCTGCGCGGATTCGGCGACCGCGCTGATCGC
CGAGCGCTGCCGGACGATCGAATCCGGCGGCCGCATGGTCGACGCGATTCTCACGCACACGGTGCTGCCGCGCATCAGCC
AGGAGATCCTGCGCGCGACGATCGAGGGGCGCGCGCTGCGGGCGATCGACGTGAGCGCCGAAGACGGCCAGTTCGTTTAC
CGATTCGAAGAGGAGGGCGCGACGTGA

Protein sequence :
MSDIGRVTLFGKLNTFLYETLEQATGFCRLRGNPYVELAHWLNQMLRRPDSDVHRILRRFDIDAAAIDRGIVSALDRLPR
GAGSVSDLSAHIDDAVERAWVYATLKYDAAQIRGAVLLLALVKTPQLRNVLYAIARDFERIVPDVLADELERIVAGSPEA
PSPAARAAAGAIGDAGAAPSAAREGSALARYAIDLTARARAGEIDPVVGRDGEIRQIVDILLRRRQNNPLLVGEAGVGKT
AVAEGFALRIVAGDVPPPLRDVELYLLDIGLLQAGASVKGEFESRLRGVIDEASSSERPVILFIDEVHTLVGAGGAAGTG
DAANLLKPALARGLLRTIGATTWSEYKQYIEKDPALTRRFQLVQVREPEEGAALAMLRGLAAKLEAHHRVLVLDDALQAA
VTLSHRYIPARQLPDKAISLLDTACARVAVSQHAVPAPIEDVRRRIDSLRVERELIARECALGAGDAQRLDAIDASIAGE
QTTLDALDARWQAERDALGKIVDWRASLLADDSSRVLDEAARADVQAKLSAALRALAELQGETPLVLPAVDTHAVAAVVS
DWTGIPLGRMVRDEMQSVLKLAETLAERVVGQPHAVGLIAERIQTARARLDDPAKPHGVFLLCGPSGVGKTETALALAET
LYGGEHNAITINMSEFQEAHTVSTLKGAPPGYVGYGQGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEIFFQVFDKGWMED
GEGRYIDFRNTVILLTSNVGSERVMQLCRDPQRLPDAQTLTDALRAPLREVFPAALLGRLTVVPYYPLTDEMLARIVALQ
LARIERRIEAHHGIALRCADSATALIAERCRTIESGGRMVDAILTHTVLPRISQEILRATIEGRALRAIDVSAEDGQFVY
RFEEEGAT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 0.0 54
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 2e-122 43
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 1e-122 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BURPS1106A_A2829 YP_001076858.1 putative ATP-dependent Clp protease, ATP-binding subunit ClpB VFG2076 Protein 0.0 59
BURPS1106A_A2829 YP_001076858.1 putative ATP-dependent Clp protease, ATP-binding subunit ClpB VFG2084 Protein 7e-141 43