Gene Information

Name : hpaR (BMA10247_A1514)
Accession : YP_001078698.1
Strain :
Genome accession: NC_009079
Putative virulence/resistance : Resistance
Product : homoprotocatechuate degradative operon repressor
Function : -
COG functional category : K : Transcription
COG ID : COG1846
EC number : -
Position : 1467856 - 1468293 bp
Length : 438 bp
Strand : +
Note : identified by match to protein family HMM PF01047; match to protein family HMM TIGR02337

DNA sequence :

ATGAATCGTACGTTCGATCACCGCAATCTGGCCATGCTGTTGCTCGAGGCCCGCGAAACGTTGATGGGCCGGTTCCGGCC
GATCCTGAAGGAATTTGCGCTGACGGAGCAGCAATGGCGGATCATTCGCGTGCTGGACGGCGAACCGTCTCATGAGCTCG
AAGCCGGGCAGATCGCGAAGCGCTGCTGCATCCTGAGCCCGAGCCTCACGGGCGTACTGGAGAGAATGGAGCGCGACGGC
CTGATTCGCCGCACGCGCGCGCAGGAGGACCAGCGCAGGCTGATCGTCAGCTTGACGCCGCAAAGTCGTCAGCTCGTCAC
GCAGATCAGCCCGCGCATCGACGAGCAGTATCGGCTCATCGAGCAGCGCTTCGGCGCGGATGCGCTCGGCGAGGTGTACG
CGGCGCTCGACAAACTGATCGACGTCGGCGGCTCGTGA

Protein sequence :

MNRTFDHRNLAMLLLEARETLMGRFRPILKEFALTEQQWRIIRVLDGEPSHELEAGQIAKRCCILSPSLTGVLERMERDG
LIRRTRAQEDQRRLIVSLTPQSRQLVTQISPRIDEQYRLIEQRFGADALGEVYAALDKLIDVGGS

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
hpcR	AAO17176.1	HpcR	Not tested	tcd island	Protein	1e-27	49

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
hpaR	YP_001078698.1	homoprotocatechuate degradative operon repressor	BAC0505	Protein	3e-23	41