Gene Information

Name : Shew_R0001 (Shew_R0001)
Accession : -
Strain : Shewanella loihica PV-4
Genome accession: NC_009092
Putative virulence/resistance : Unknown
Product : 16S ribosomal RNA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 151087 - 152641 bp
Length : 1555 bp
Strand : +
Note : -

DNA sequence : 
AATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGGTAACAGAAAGTA
GCTTGCTACTTTGCTGACGAGCGGCGGACGGGTGAGTAATGCCTAGGGAACTGCCCAGTCGAGGGGGATAACAGTTGGAA
ACGACTGCTAATACCGCATACGCCCTACGGGGGAAAAGAGGGGATCTTCGGACCTTCTGCGATTGGATGTACCTAGGTGG
GATTAGCTAGTAGGTGAGGTAATGGCTCACCTAGGCGACGATCCCTAGCTGTTCTGAGAGGATGATCAGCCACACTGGGA
CTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGCC
GCGTGTGTGAAGAAGGCCTTCGGGTTGTAAAGCACTTTCAGCGAGGAGGAAAGGTTAACGGTTAATACCCGTTAGCTGTG
ACGTTACTCGCAGAAGAAGCACCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAGGGGTGCAAGCGTTAATCGGAAT
TACTGGGCGTAAAGCGTACGCAGGCGGTTGATTAAGCGAGATGTGAAAGCCCCGGGCTTAACCTGGGAACTGCATTTCGA
ACTGGTCAACTAGAGTCTTGTAGAGGGGGGTAGAATTTCAGGTGTAGCGGTGAAATGCGTAGAGATCTGAAGGAATACCG
GTGGCGAAGGCGGCCCCCTGGACAAAGACTGACGCTCAGGTACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGT
AGTCCACGCCGTAAACGATGTCTACTCGGAATTTGGTGTCTTGAACACTGGGTTCTCAAGCTAACGCATTAAGTAGACCG
CCTGGGGAGTACGGCCGCAAGGTTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATT
CGATGCAACGCGAAGAACCTTACCTACTCTTGACATCCAGAGAACTTTTCAGAGATGAATTGGTGCCTTCGGGAACTCTG
AGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCCT
TACTTGCCAGCGGGTAATGCCGGGAACTTTAGGGAGACTGCCGGTGATAAACCGGAGGAAGGTGGGGACGACGTCAAGTC
ATCATGGCCCTTACGAGTAGGGCTACACACGTGCTACAATGGTCGGTACAGAGGGTTGCGAAGCCGCGAGGTGGAGCTAA
TCTCACAAAGCCGGTCGTAGTCCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCA
GAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGCTGCACCAGAAGTAGAT
AGCTTAACCTTCGGGAGGGCGTTTACCACGGTGTGGTTCATGACTGGGGTGAAGTCGTAACAAGGTAGCCCTAGGGGAAC
CTGGGGCTGGATCACCTCCTTACCTATACGATTGA

Protein sequence : 
-

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
FTT_r07 - 16S ribosomal RNA Not tested FPI DNA e-142 89.3
FTT_r10 - 16S ribosomal RNA Not tested FPI DNA e-142 89.3
FTM_1695 - 16S ribosomal RNA Not tested FPI DNA e-242 88.9
FTM_1085 - 16S ribosomal RNA Not tested FPI DNA e-242 88.9
FTW_2069 - 16S ribosomal RNA Not tested FPI DNA e-242 88.5
FTW_2070 - 16S ribosomal RNA Not tested FPI DNA e-242 88.5