Gene Information

Name : Shew_0188 (Shew_0188)
Accession : YP_001092319.1
Strain : Shewanella loihica PV-4
Genome accession: NC_009092
Putative virulence/resistance : Virulence
Product : heme exporter protein CcmC
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0755
EC number : -
Position : 194687 - 195433 bp
Length : 747 bp
Strand : -
Note : TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: sfr:Sfri_0177 heme exporter protein CcmC

DNA sequence : 
ATGTGGAAATGGCTACATTCTTACGCAGACCCTCAAAAAGCCTATAACCTCTCTGGCAGGCTATTGCCTTGGTTTGCGAC
GCTTGCAATCGCGTTTATTGGTGTGGGTTCTATCTGGGGTCTGTTGTTTGCGCCGGTAGATTACCAGCAGGGTGACAGTT
ACCGCATCATCTTTATCCACGTACCCGCGGCTTCTATGTCGATGTCGGCCTACATGGCGATGGCAACCTCGGCCTTTATC
GGCCTAGTATGGCAGATTAAGTCTGCCGACTGGGCGGCAGCGGCCATTGCGCCTATCGGTGCGGTCGTTACCTTTATCGC
CCTCATCACGGGTGCTGCCTGGGGCAAGCCTATGTGGGGCACCTGGTGGGTGTGGGACGCTCGCCTGACATCAGAACTTG
TGTTGCTGTTCCTCTACCTGGGTGTGATCTCTCTGTACGCCTCTTTCGAAGATAAGGTACTCGCCGCTCGTGCCGCCGGC
ATTCTGGCCATCGTGGGCGTGATCAACATTCCTATCATCAAGTACTCGGTAGAGTGGTGGAACTCACTACACCAGCCTGC
GACCATCAAGATCACCGAGAAGTCATCTATGGCACCTGAGATGTTATATCCACTGCTGATCAACATCTTCGGTTTCGGCC
TGATGATAGGCGCTATCACGCTTATTCGTTTCAGAGCCGAGATACTTGCCAGAAACGGTATGCGTCCCTGGGTCAGGGAA
CTCGCGCAAGCTGAAGGAGTCAAATAA

Protein sequence : 
MWKWLHSYADPQKAYNLSGRLLPWFATLAIAFIGVGSIWGLLFAPVDYQQGDSYRIIFIHVPAASMSMSAYMAMATSAFI
GLVWQIKSADWAAAAIAPIGAVVTFIALITGAAWGKPMWGTWWVWDARLTSELVLLFLYLGVISLYASFEDKVLAARAAG
ILAIVGVINIPIIKYSVEWWNSLHQPATIKITEKSSMAPEMLYPLLINIFGFGLMIGAITLIRFRAEILARNGMRPWVRE
LAQAEGVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ccmC AAN62109.1 putative heme exporter protein C Not tested PAGI-2(C) Protein 2e-38 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shew_0188 YP_001092319.1 heme exporter protein CcmC VFG1856 Protein 1e-42 51