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Name : secD (Shew_2335) Accession : YP_001094460.1 Strain : Shewanella loihica PV-4 Genome accession: NC_009092 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 2728326 - 2730176 bp Length : 1851 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : GTGTTAAATAAATACCCAATGTGGAAGAACCTGATGGTGGCGTTGATCATCGCCGTCGGTGCCTTCTACGCAATACCAAA TTTATTTGGTGAAGATCACGCGGTGCAAGTCGTGGCCACACGTGGCGCGGAAGTTAATGCTTCGACTCAGAGTGAAGTCA CTGACATCCTGTCGGCGAAAGGCATCGCGGTGAAGCGTTCAGAGTTGGAAAACGGTCAGCTATTGGTACGTGTTGCCGAT GCGGACCAGCAACTGCTGGCGAAAGAAGCAATTGCCGAGGTACTCGGCGACAAATATATCGTGGCGCTTAACCTGGCCCC GGCTACGCCTCAGTGGCTGGAGTCTATGGGTGGTAGCCCGATGAAGCTGGGTCTGGACCTTCGCGGTGGTGTGCACTTCC TGATGGAAGTGGACATGAGCGAGGCGATCCGCAAGATGACCGAAGCGAAAATTGCCGATTTCAGAACCGATCTTCGTGGT GAAAAAATTCGTTATGCGGGTATTCGCAATACCCCTAAAGGGATTGAGATCAAGTTTCGTGATGCCGAGAATTTAGCCAA GGCAGAACGATTCCTCAAGAGCCGCACTAACGAGATGGTGTTCGTCGATGCGTCGTCTGGTAGCGATTTCATGCTGCTGG CGAACATGAGCGAGATCTACCTCAAGCAAGTGAAAGAGGAAGCGCTGCAGCAGAACATCACCACCTTGCGTAATCGTGTA AACGAGTTGGGTGTTGCCGAGCCAGTGGTTCAGCGCCAAGGCGCGGAGCGCATCATCGTCGAATTGCCGGGTGTTCAAGA CACGGCCCGCGCCAAGGATATCCTGGGGGCTACCGCGTCTATCGAATTCCACATGGTAGACGAGAAGGCCGATGCCGCGG CGATTGCAGCCGGTCGCGTGTCTCCAGGTTCGCAGATCTATGATCGTCGTGAAGGCGGTAAAGTGGCTCTGCAAAAAGAG GTAATGCTCACAGGTGACCATATTCAGGGCGCACAGCCAAGTTTCGATGAATACAGCCGTCCTCAGGTGTCTATTAACCT GGACTCTAAGGGTGGTTCTATCTTCTCCAACGTGACCAAGGACAACATCGGCAAGCCGATGGCGACCCTGTTCATCGAGT ATAAAGATAACGGTGCCAAGAATCCTGACGGCAGCGTGAAGATGGATAAGATCGAAGAGGTGATTTCGGTTGCGACCATC CAGGCGCGTCTGGGCCGTAACTTCGTTATTAACGGTCTTGACCACTCTGAAGCGCAAAGCCTTGCCCTCTTGCTACGTGC CGGTGCCTTGATCGCGCCAGTCTCAATTGTCGAAGAACGCACCATTGGTCCTAGCCTGGGTGCGGAAAACATCGACAACG GTCTGCAGGCGATGATCTGGGGTATGGCGGTCGTGTTAATCTTCATGCTGGTCTACTACCGCGGCTTTGGCCTTATCGCT AACCTGGCGCTGACGGCTAACCTAGTAATGGTAGTGGGCGTCATGTCTATGATCCCTGGCGCCGTGCTGACCCTACCGGG TATTGCCGGTATGGTATTGACAGTCGGTATGGCGGTTGACGGTAACGTACTGATTTACGAACGTATTCGTGAAGAGTTAC GTGCCGGACGCAGCGTTCAGCAGGCGATCCATGAAGGTTATGGCAACGCGTTCTCAACCATTGCCGATGCCAACATCACC ACCTTTATGACGGCCTTGATCCTGTTTGCCGTGGGTACCGGCGCCGTGAAAGGCTTCGCCGTGACCCTGATGATAGGTAT CGCGACCTCTATGTTCACCGCCATCGTGGGTACTCGCTCGATAGTTAACGCTATCTGGGGCGGTAAGCGCGTGAAGAAAC TGTCTATTTAA Protein sequence : MLNKYPMWKNLMVALIIAVGAFYAIPNLFGEDHAVQVVATRGAEVNASTQSEVTDILSAKGIAVKRSELENGQLLVRVAD ADQQLLAKEAIAEVLGDKYIVALNLAPATPQWLESMGGSPMKLGLDLRGGVHFLMEVDMSEAIRKMTEAKIADFRTDLRG EKIRYAGIRNTPKGIEIKFRDAENLAKAERFLKSRTNEMVFVDASSGSDFMLLANMSEIYLKQVKEEALQQNITTLRNRV NELGVAEPVVQRQGAERIIVELPGVQDTARAKDILGATASIEFHMVDEKADAAAIAAGRVSPGSQIYDRREGGKVALQKE VMLTGDHIQGAQPSFDEYSRPQVSINLDSKGGSIFSNVTKDNIGKPMATLFIEYKDNGAKNPDGSVKMDKIEEVISVATI QARLGRNFVINGLDHSEAQSLALLLRAGALIAPVSIVEERTIGPSLGAENIDNGLQAMIWGMAVVLIFMLVYYRGFGLIA NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANIT TFMTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRVKKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 1e-121 | 47 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 1e-121 | 47 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 1e-121 | 47 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 8e-122 | 47 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 2e-122 | 47 |
