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Name : Shew_0347 (Shew_0347) Accession : YP_001092478.1 Strain : Shewanella loihica PV-4 Genome accession: NC_009092 Putative virulence/resistance : Unknown Product : cytochrome c assembly protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG1138 EC number : - Position : 394380 - 396371 bp Length : 1992 bp Strand : - Note : PFAM: cytochrome c assembly protein; KEGG: she:Shewmr4_0487 cytochrome c-type biogenesis protein CcmF DNA sequence : ATGAGTAGCTTGGTCCCCTTGGCTGAAGGCGAGACCATGACAGCGGAAATTGGCTTACTACTTCTTATTATCTCCTTGAC CCTGTGTTTACTCACGGCCATGAGCCCTGTCATGCCTGCCTGCGGGGTCAAACTCAGGCTTAAGCCTTACCAGCCCCTCT TTATTCGCCTTAATAGCTTGGCGCAGGTGGCTAGCCTGTTTATCCTGGCCTATCTGTTTCTCAGCAACGATTTTTCCGTG GCCTATGTGGCCAACAATTCCAACACCCAGCTGGCCAGCCTCTATAAGCTAGCCGCCGTCTGGGGGGGTCACGAAGGCTC TATGCTGTTCTGGATTGGCGCCATGGGGATCTGGAGCTGCGTGCTCAGCCTCCAGCCCAACCACAAAGACCGGTTTTTTC ACTACCTCCACGCCGTGCTGGGCGCCATTCAGGCCGGCCTAATCGCCTTCTTGCTCATAGGATCGAATCCCTTCGCCAGG CTTCTACCCGGCATCCCGGTGGAGGGGCGGGATCTCAATCCCATACTGCAGGACATAGGCTTAATTCTGCATCCGCCGCT ACTCTTTATCGGCTATGTGGGACTGGCGGTCTGTTTCGCCGCAGCCATCGCCGCCCTGCTGGATAACAGTCAGCCGCTAA AGCAGCACTGCCGATTGATGCGCCCATGGGCGATACTGGCCTGGGCCATGTTGACCGGCGGCAACGCCTTCGGCTCCTGG TGGGCCTACAACGAGCTGGGCTGGGGCGGATGGTGGTTCTGGGACCCGGTGGAAAATGCCTCCTTTATTCCCTGGCTGGT CGCCACGGCGCTGATGCACTCATTAATCTTGGGCGAACGTCGAGACAGATTTCATGGCACCAGCCTGTTCCTGGCAATCT TAGGCTTCAGCCTCTGCCTGCTGGGCACCTTCCTGGTGCGCTCAGGTGTGGTGCAATCGGTTCACGCCTTCGCCGCCGAT CCCCTGCGCGGTGGCGCCATGTTGACTTTGTTTGCCCTGGTCTCTATCTGCGGCTTTACCCTGCTGCTGCAGCGCCTCCC TAGCCTCTACCGACCGGTAAATAGCAATATGCTGAGCCGGGAAAGCCTGATGCAGCTGGGCAATCTCTTATTGCTGGTCG CCGCCATCTCCATCTTACTGGGCAGCTGCTATCCGCTGCTCTATGAGGTAGCAAGCGGTCAGAGCATCTCGGTGGGCGCC CCCTACTTTAATAGCCTCTTCATCCCGCTGACCTGGCTTATCTGTCTGGTCATGGGCGCCGCGCCTTTGATGCGCTGGCA AGTATCAAACCCTGGCATGCTAAGACAGTTAACGGCGCTGGCAGCTATCTGCCTGTTTATCGGCCTCACTCTCAATACTC TGCTGCTGAAAGAGTTTGCCGCCCACTTCCTGCTTGGTAGCTTCGCCTGCCTCTGGCTGCTCGGCTGTACTGGGCTCTAT CTGCATAAACGCCTGGCGGCGTACACAGGCGCGGGGGATAACAGGCGCTGCTACGCCATGAGCTTTGCTCACCTGGGTGT GGCGCTGAGCATACTTGGGGCCACCTGCTCCAGCTATTTTCAGCAGGAGGAGCTACTCAGGATGGGGCCGGGTCAAGGCA AGGAGGTGGCGGGCTATACCTTTATCTACCGGGCGACCGAAACCGTTTCCCACACCAGCTACAGTGCACTTCAGGCAAAG ATAGAGGTGAGAGACAGACGCGAGCAGCATCTTGCCTATCTCTATCCCCAGCGTCAGACCTTTAACAGCAACGCCATGCA GATCTCCGCCGCCGGGATCCATCGCAGCCTGTTTGCCGATCTCTATATCTCCATGGGCAATAGGCTGAGCGAGGAGGAGT TTCTGATCCGCATCAGCTACAAACCCCTGATTGGCTGGATCTGGATAGGCGGCCTCATCATGATGTTTGCCGGCCTGAGC CTGCTGCTGCCACGCAAGGTGCGCCGACTGTCTCGGGCGCCCTCGCCGCAACTGGCGGTGAAAGGAGCCTGA Protein sequence : MSSLVPLAEGETMTAEIGLLLLIISLTLCLLTAMSPVMPACGVKLRLKPYQPLFIRLNSLAQVASLFILAYLFLSNDFSV AYVANNSNTQLASLYKLAAVWGGHEGSMLFWIGAMGIWSCVLSLQPNHKDRFFHYLHAVLGAIQAGLIAFLLIGSNPFAR LLPGIPVEGRDLNPILQDIGLILHPPLLFIGYVGLAVCFAAAIAALLDNSQPLKQHCRLMRPWAILAWAMLTGGNAFGSW WAYNELGWGGWWFWDPVENASFIPWLVATALMHSLILGERRDRFHGTSLFLAILGFSLCLLGTFLVRSGVVQSVHAFAAD PLRGGAMLTLFALVSICGFTLLLQRLPSLYRPVNSNMLSRESLMQLGNLLLLVAAISILLGSCYPLLYEVASGQSISVGA PYFNSLFIPLTWLICLVMGAAPLMRWQVSNPGMLRQLTALAAICLFIGLTLNTLLLKEFAAHFLLGSFACLWLLGCTGLY LHKRLAAYTGAGDNRRCYAMSFAHLGVALSILGATCSSYFQQEELLRMGPGQGKEVAGYTFIYRATETVSHTSYSALQAK IEVRDRREQHLAYLYPQRQTFNSNAMQISAAGIHRSLFADLYISMGNRLSEEEFLIRISYKPLIGWIWIGGLIMMFAGLS LLLPRKVRRLSRAPSPQLAVKGA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ccmF | YP_217241.1 | cytochrome c-type biogenesis protein | Not tested | SPI-12 | Protein | 5e-83 | 42 |
| ccmF | AAN62106.1 | putative cytochrome C-type biogenesis protein CcmF | Not tested | PAGI-2(C) | Protein | 4e-81 | 41 |
