|
Name : secD (Sputcn32_2482) Accession : YP_001184002.1 Strain : Shewanella putrefaciens CN-32 Genome accession: NC_009438 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 2881108 - 2882958 bp Length : 1851 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : GTGTTAAATAAATACCCAATGTGGAAAAACATTATGGTGATGCTTATCATCGCCATAGGTTGTTTCTATGCCGTACCGAA CCTTTTTGGTGAAGATCACGCGGTGCAAGTGGTGGCGACTCGTGGTGCAGAAGTAACTGCATCTACCCAAGCCAGAGTGA ACGAGCTGTTAGCCGGTAAGGGCATTGCGGTAAAGCGCTCTGAGCTTGAAAAAGGCCAGTTGTTGGTTCGTGTGCAGAAC GCGGATCAACAATTATTAGCAAAAGAAACGATCGCAGAAGATTTAGGTGATAAGTTTAGTGTTGCACTTAACTTAGCTCC AGCAACACCGCAATGGCTCGAGTCTATGGGTGGTAGCCCTATGAAACTCGGTCTCGATCTTCGCGGCGGTGTGCACTTCT TAATGGAAGTGGACATGGGCGAAGCGATCCGCAAGATGGAAGAGGCTAAGGTTGCTGACTTTCGTGCACAATTACGTGAA GAAACAATCCGTTATGCGGGCATTCGTGTTAATGCCTCTGGGATTGAGATTAAATTCCGTGATGCTGAAAGTTTAGCCAG TGCAGAACGTTTCCTTAAATCTCGCAGTAACGATATGGTCTTCACCGATGTGAGCAAGGGTGATGATTTTGCCCTGCAAG CGGTGATGAGTGAAGCTTATCTTAAGCAGGTTAAAGAAGAAGCACTGCAACAAAACATTACCACTATTCGTAACCGTGTT AATGAGTTAGGTGTTGCTGAACCTGTAGTACAGCGCCAAGGTGCAGAGCGTATTATCGTTGAACTACCTGGTGTACAAGA TACGGCTCGCGCTAAAGAAATTTTAGGGGCAACCGCATCGATTGAATTCCATATGGTGGATGACAAAGCCGATCCTAATG CCGCGCAATCAGGACGTATCTCTGCAGGCTCTGAAGTGTATCAACGTCGTGAAGGCGGCCAAGTCGTATTGAAAAAAGAA GTGATGCTAACGGGAGATCATATCACCGGCGCCCAACCTAGCTTTGATCAATACAGTCGCCCACAGGTGAGCATTAATCT TGACGCTAAAGGCGGTACCATTTTCTCTAATGTGACGAAGGACAACATAGGTAAACCTATGGCGACCTTATTCATTGAAT ATAAAGACAGTGGTGAACGTAACGCCGATGGCAGCGTGAAAATGCAGAAAATCCAAGAAGTGATTTCTGTGGCAACCATT CAAGCCCGTTTAGGTCGTAACTTTGTGATCACAGGTTTAAGCCACGGTGAAGCACAAAACCTTGCTTTGCTGTTACGCGC TGGAGCTTTGATTGCACCTGTATCCATTGTTGAAGAACGTACCATTGGTCCAAGTTTAGGCGCTGAAAATATTGAGAATG GTGTTCAAGCTATGGTGTGGGGTATGGCCGTCGTCTTAATCTTCATGCTGGTGTACTACCGCGGTTTTGGGCTTATCGCT AACCTCGCGTTAACTGCAAACTTAGTCATGGTTGTAGGCGTGATGTCGATGATCCCAGGCGCAGTATTGACCCTTCCCGG TATTGCGGGGATGGTGTTGACAGTGGGGATGGCAGTTGATGGTAACGTACTCATTTATGAGCGTATTCGTGAAGAACTTC GTGCAGGACGTAGTGTACAGCAGGCCATCCATGAAGGTTATGGTAATGCGTTTTCAACCATTGCCGATGCGAACATCACG ACTTTCCTTACCGCATTAATTTTATTTGCTGTGGGGACTGGTGCTGTTAAAGGCTTCGCGGTGACCTTGATGATAGGTAT TGCGACTTCCATGTTTACCTCTATCGTGGGTACTCGCTCCATCGTTAATGCGATTTGGGGTGGTAAGCGCGTGAAGACAC TGTCTATCTAA Protein sequence : MLNKYPMWKNIMVMLIIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQARVNELLAGKGIAVKRSELEKGQLLVRVQN ADQQLLAKETIAEDLGDKFSVALNLAPATPQWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRAQLRE ETIRYAGIRVNASGIEIKFRDAESLASAERFLKSRSNDMVFTDVSKGDDFALQAVMSEAYLKQVKEEALQQNITTIRNRV NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQSGRISAGSEVYQRREGGQVVLKKE VMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSNVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATI QARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIENGVQAMVWGMAVVLIFMLVYYRGFGLIA NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANIT TFLTALILFAVGTGAVKGFAVTLMIGIATSMFTSIVGTRSIVNAIWGGKRVKTLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 6e-125 | 48 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 6e-125 | 48 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 6e-125 | 48 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 3e-125 | 48 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-125 | 48 |
