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Name : Pmen_0023 (Pmen_0023) Accession : YP_001185530.1 Strain : Pseudomonas mendocina ymp Genome accession: NC_009439 Putative virulence/resistance : Virulence Product : YscC/HrcC family type III secretion outer membrane protein Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 23528 - 25618 bp Length : 2091 bp Strand : - Note : TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family; PFAM: type II and III secretion system protein; NolW domain protein DNA sequence : ATGCGCAATACCCTGATATCGCTGTCGTGGTTGTTATGGCTCGTGTCCATACCGGCGCACGCCGTGCCACCCGAGAGCTG GAAACAGACCGCCTATGCCTACGATGCCCGGCAAACCGACCTGAACTCGGCGTTGGCGGACTTCGCCCGGGAGTTCGGTC TATCGCTGGACATGCCGCCCATGGATGGCATCGTCGACGGTCGTATCCGCGCCAGCAACCCGCAGGAATTTCTCGAACGA CTCGGGCGTGAATACCAGTTCCAATGGTTCGTTTACAACGAAACGCTCTACATCAGCCCCACCCGCGAACAGACGTCGGC CCGCATCGAGGTCTCGCCGGATGCCGTCGATGACCTGGAAAACGCACTGACCGCCATCGGCCTGCTCGACCCGCGTTTCG GCTGGGGCACGCTACCCGAAGAAGGCCTGGTGCTGGTTCGCGGCCCGGCCCAGTACGTACAGTTCATTCGCGAATACAGC CAGAAGGTCGAAGAACCGGAGAAAGCGGAAAAACAGGACGTCATCGTCTTCACCCTGAAGTATGCCAACGCGGCTGATCG CTCCATTCGTTATCGTGATCAGGAGCTGCGTGTAGCAGGTGTGGCCAGCATCCTTCGCGAACTGCTGGAAACCCGGTCAC GGGGTGAACCCATCAGCGGCGTGGGCATTTTCCAACCATCCGGTACGACCCAAGGCCTGGCGCCAACCCGCCCGATGGGG TTGCCTTACGCTGGGATGAGCGGCCTGGATGGCGGCCTCCTCGAGCAGGGACTCGACAATGTACTGGGGCTGGCTCAGTC CTCTTCGCGCAAGCGCAGTGAAAGCCGCAGCCGCTCGCAGATCCGCGTCAGCGCCGACGTGCGCAACAACGCCGTCCTGA TCTATGACCTGCCAGAGCGCAAGGCCATCTATCAGGGCCTCATCCAGCAACTGGACGTGCCGCGCAACCTGATCGAGATC GATGCCGTGATTCTCGATATCGACCGTAACGAGCTGGCCGAACTGTCCAGCCGCTGGGCCTTCAACTCCGGCAGCGTCAG CGGCGGCGCCAACCTGTTCGAACCCGGTACCACGTCGACGCTGTTCATCCAGGATGCCGGTCGGTTCGCCGCGGAATTGC GTGCACTGGAGGGAACCGGGGCCGCCTCGATCATGGGCAACCCCTCGATCCTGACCCTGGAAAACCAGCCCGCGGTCATC GACTTCAGCCGCACCGAGTACCTGACGGCGCTGGCCGAGCGCGTTGCCAATATCCAACCCATCACCGCCGGCACCAGCCT GCAGGTGATCCCGAGGTCACTGAATCAGGGCAGCCGCTCCCAGGTCCAGCTGATCGTCGACATCGAAGACGGACAGATCA TCGAGTCGAACATCTCCGAGGAGCAGCCGTCGGTACGCCGTGGCAATGTCAGCACCCAGGCAGTGATCGCCGAGCATGGC TCGCTGGTGATCGGCGGTTTCCACAGTCTCGAAGCCAACGACAGGATCAACAAGATTCCCTTGCTCGGCGATATCCCGGT CATCGGTAAATTGCTGTTCCAGTCACGCAATCGCGAATTCAACCGGCGTGAGCGCTTGTTCATCCTCACCCCTCGTCTGA TCGGAGATCAGGTGAACCCTGCGCGCTACGTGCAACATGGCAATCCGCATAACCTGGACCGGCAACTTCGCGAGATCGAC GAGCGCCGCCGGGGTACCGAACGCCCGAGTCGGGGCGACATCGAACATGCCTTCACCCAGCTGCTCGATGGCATACACCC CTCCGGGTTCGACAGCGCACCCTTGCCGCTCAGGGCAGAAACGCTCTGCAACTCGGATCACGGACTGACGCTGGATGCCG AACGCTCCCAGTGGTTCGCCCGCGATGGTTGGGGTGTAGCAGTGGTCGTGGCACGTAACGACACGGCACAACCGATACGC ATCGATGAGAGCCGCTGTGGGGGACGCTGGGCCATGGGGGTCAGTGCCTGGCCACGCGCCTGGCTCCAGCCTGGCGAGGA GAGCGAAGTGTTCATTGCCCTGCGCCAGCCGCAATCGCTGCAAAAAACCGGACAAGGCCGAACTTCATTGCTGCACAGGA GCACCCCTTGA Protein sequence : MRNTLISLSWLLWLVSIPAHAVPPESWKQTAYAYDARQTDLNSALADFAREFGLSLDMPPMDGIVDGRIRASNPQEFLER LGREYQFQWFVYNETLYISPTREQTSARIEVSPDAVDDLENALTAIGLLDPRFGWGTLPEEGLVLVRGPAQYVQFIREYS QKVEEPEKAEKQDVIVFTLKYANAADRSIRYRDQELRVAGVASILRELLETRSRGEPISGVGIFQPSGTTQGLAPTRPMG LPYAGMSGLDGGLLEQGLDNVLGLAQSSSRKRSESRSRSQIRVSADVRNNAVLIYDLPERKAIYQGLIQQLDVPRNLIEI DAVILDIDRNELAELSSRWAFNSGSVSGGANLFEPGTTSTLFIQDAGRFAAELRALEGTGAASIMGNPSILTLENQPAVI DFSRTEYLTALAERVANIQPITAGTSLQVIPRSLNQGSRSQVQLIVDIEDGQIIESNISEEQPSVRRGNVSTQAVIAEHG SLVIGGFHSLEANDRINKIPLLGDIPVIGKLLFQSRNREFNRRERLFILTPRLIGDQVNPARYVQHGNPHNLDRQLREID ERRRGTERPSRGDIEHAFTQLLDGIHPSGFDSAPLPLRAETLCNSDHGLTLDAERSQWFARDGWGVAVVVARNDTAQPIR IDESRCGGRWAMGVSAWPRAWLQPGEESEVFIALRQPQSLQKTGQGRTSLLHRSTP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcC | NP_791216.2 | outer-membrane type III secretion protein HrcC | Virulence | Hrp PAI | Protein | 0.0 | 70 |
| hrcC | AAB05085.2 | HrcC | Virulence | Hrp PAI | Protein | 0.0 | 69 |
| hrcC | AAT96152.1 | HrcC | Virulence | T-PAI | Protein | 0.0 | 68 |
| hrcC | AAT96206.1 | HrcC | Virulence | T-PAI | Protein | 0.0 | 68 |
| hrcC | AAC34756.1 | HrcC | Virulence | Hrp PAI | Protein | 0.0 | 67 |
| hrcC | AAT96354.1 | HrcC | Virulence | S-PAI | Protein | 5e-140 | 49 |
| hrcC | AAT96315.1 | HrcC | Virulence | S-PAI | Protein | 9e-139 | 49 |
| hrcC | AAT96274.1 | HrcC | Virulence | S-PAI | Protein | 3e-138 | 49 |
| hrcC | ABA47303.1 | HrcC | Virulence | S-PAI | Protein | 8e-145 | 48 |
| hrcC | AAB49179.1 | HrcC | Virulence | Hrp PAI | Protein | 2e-130 | 45 |
