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Name : Pmen_0026 (Pmen_0026) Accession : YP_001185533.1 Strain : Pseudomonas mendocina ymp Genome accession: NC_009439 Putative virulence/resistance : Virulence Product : HrpE/YscL family type III secretion apparatus protein Function : - COG functional category : - COG ID : - EC number : - Position : 26417 - 27004 bp Length : 588 bp Strand : - Note : TIGRFAM: type III secretion apparatus protein, HrpE/YscL family; PFAM: HrpE family protein DNA sequence : GTGCTGACTAAACGCCGCTTCACCCTTGGCTCAGCGGTACTCGAAGAACCGATTCTGCGCCGACAGCTGCTTGCAGAAAG CCTGCGCGCGGACGAGCTTCTGGCCCAAGCACGCCTGCAGGCCGAACAATTGCTGCAGCAGGCCCACGAGCAGCGCCAGC ACTACCTCGATGAAGCCGTCGCCCGCTTCTGGAGCGAAGCCAACGCACTGCTTCAGGCGATACAGGAGGAACGCGCAAGT TATCAGCGCGATGCCTTGTCCGCTGTCGACTCGCTATTGAACATCGCCCTGTCGCGTTTGCTGGATGAAACGGATCTGCC GCAGCGGATCAGCGCATTGCTGCGCAACCTGGTCGTTGGCCTGCCAAGCAAGGCGGAGGCGAACCTGGCCTGTCACCCCG AAGCCGCCAGCACGGTTCGCGCCTGGCTGCAGACGATGGGCTTCGACGCGCTCTGGCAGGTGCAGGAAGACCCAGGCATG GCACCTGAATCGCTACGCCTGAGCAACACGCTGGGTACCTTTCACATCGACTGGCCGTCGTTGCGGCGCGGGCTGATACC GAGCCTGCCCGAAGCCCGGCATGCCTAA Protein sequence : MLTKRRFTLGSAVLEEPILRRQLLAESLRADELLAQARLQAEQLLQQAHEQRQHYLDEAVARFWSEANALLQAIQEERAS YQRDALSAVDSLLNIALSRLLDETDLPQRISALLRNLVVGLPSKAEANLACHPEAASTVRAWLQTMGFDALWQVQEDPGM APESLRLSNTLGTFHIDWPSLRRGLIPSLPEARHA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpE | AAB05082.1 | HrpE | Virulence | Hrp PAI | Protein | 6e-28 | 46 |
| hrpE | AAB00131.1 | HrpE | Virulence | Hrp PAI | Protein | 6e-24 | 44 |
| hrpE | NP_791213.1 | type III secretion protein HrpE | Virulence | Hrp PAI | Protein | 6e-24 | 44 |
| hrpE | AAC35803.1 | putative hrp type III secretion pathway protein | Virulence | Hrp PAI | Protein | 8e-26 | 43 |
| hrpE | AAT96155.1 | HrpE | Virulence | T-PAI | Protein | 3e-22 | 41 |
| hrpE | AAT96209.1 | HrpE | Virulence | T-PAI | Protein | 9e-22 | 41 |
