Name : Pmen_2673 (Pmen_2673) Accession : YP_001188160.1 Strain : Pseudomonas mendocina ymp Genome accession: NC_009439 Putative virulence/resistance : Virulence Product : RNA polymerase sigma factor Function : - COG functional category : K : Transcription COG ID : COG1595 EC number : - Position : 2932147 - 2932671 bp Length : 525 bp Strand : + Note : Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate DNA sequence : GTGCGCGTGTCGGTTCAGGATTCCAGCAATCAGCAGTTGGTCGGCCTGCTTTACCGCGACCATCGCGACTGGCTGTTCGG CTGGCTGCGCAAAAGTCTGAACTGCACGCAGCGCGCCGAAGACCTGAGTCAGGACACCTTCGTGCGCCTGCTCGGCCGCC CGGACCTGCACAGCCCGCGTGAACCTCGTGCCTTGCTCACCACCATCGCCAGGGGCCTGCTGATCGACCAGTTCCGCCGC AGTGCGCTGGAGCGCGCCTATCTCGAAGAACTCGCTCTGGCCCCCGAGGCCCTGCAACCGAGCCCCGAGGAACAGGCGCT GGCGCTGGAACAGCTGAGCGAGATCGATCGTCTGCTCGGACACCTGTCGAGCAAGGCGCGCGCCGCCTTCCTCTACAACC GCCTGGACGGTCTCGGCCATGCCGAGATCGCCGAGCGTCTGGGCGTATCGCCCTCGCGGGTGCGCCAGTACCTCGCCCAG GGCCTGCGCCAGTGCTACATCGCGCTGTATGGAGCGCCGCAATGA Protein sequence : MRVSVQDSSNQQLVGLLYRDHRDWLFGWLRKSLNCTQRAEDLSQDTFVRLLGRPDLHSPREPRALLTTIARGLLIDQFRR SALERAYLEELALAPEALQPSPEEQALALEQLSEIDRLLGHLSSKARAAFLYNRLDGLGHAEIAERLGVSPSRVRQYLAQ GLRQCYIALYGAPQ |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
unnamed | AAL08458.1 | FecI | Virulence | SRL | Protein | 3e-18 | 48 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
Pmen_2673 | YP_001188160.1 | RNA polymerase sigma factor | VFG1049 | Protein | 1e-18 | 48 |