Gene Information

Name : Pmen_2673 (Pmen_2673)
Accession : YP_001188160.1
Strain : Pseudomonas mendocina ymp
Genome accession: NC_009439
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 2932147 - 2932671 bp
Length : 525 bp
Strand : +
Note : Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate

DNA sequence :
GTGCGCGTGTCGGTTCAGGATTCCAGCAATCAGCAGTTGGTCGGCCTGCTTTACCGCGACCATCGCGACTGGCTGTTCGG
CTGGCTGCGCAAAAGTCTGAACTGCACGCAGCGCGCCGAAGACCTGAGTCAGGACACCTTCGTGCGCCTGCTCGGCCGCC
CGGACCTGCACAGCCCGCGTGAACCTCGTGCCTTGCTCACCACCATCGCCAGGGGCCTGCTGATCGACCAGTTCCGCCGC
AGTGCGCTGGAGCGCGCCTATCTCGAAGAACTCGCTCTGGCCCCCGAGGCCCTGCAACCGAGCCCCGAGGAACAGGCGCT
GGCGCTGGAACAGCTGAGCGAGATCGATCGTCTGCTCGGACACCTGTCGAGCAAGGCGCGCGCCGCCTTCCTCTACAACC
GCCTGGACGGTCTCGGCCATGCCGAGATCGCCGAGCGTCTGGGCGTATCGCCCTCGCGGGTGCGCCAGTACCTCGCCCAG
GGCCTGCGCCAGTGCTACATCGCGCTGTATGGAGCGCCGCAATGA

Protein sequence :
MRVSVQDSSNQQLVGLLYRDHRDWLFGWLRKSLNCTQRAEDLSQDTFVRLLGRPDLHSPREPRALLTTIARGLLIDQFRR
SALERAYLEELALAPEALQPSPEEQALALEQLSEIDRLLGHLSSKARAAFLYNRLDGLGHAEIAERLGVSPSRVRQYLAQ
GLRQCYIALYGAPQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 3e-18 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pmen_2673 YP_001188160.1 RNA polymerase sigma factor VFG1049 Protein 1e-18 48