|
Name : Pmen_2786 (Pmen_2786) Accession : YP_001188273.1 Strain : Pseudomonas mendocina ymp Genome accession: NC_009439 Putative virulence/resistance : Unknown Product : cytochrome c-type biogenesis protein CcmF Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG1138 EC number : - Position : 3066815 - 3068788 bp Length : 1974 bp Strand : - Note : TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein DNA sequence : ATGATCCCCGAGCTCGGCCATCTGGCGATGATCCTGGCGCTGTGCCTGTGCCTGGTACAGGCCACGCTGCCGTTGATCGG TGCCTGGCGCGGTGACCACCAGTGGATGAGCCTGGCGCAGCCGGCGGCCTGGGGGCAGTTCGTCTTCCTGTTGTTCTCGT TCATCTGCCTGACCTATGCCTTCATGGTCGACGACTTCTCCGTCGCCTATGTGGCGCACAACTCCAACAGCGCGCTGCCC TGGTACTACAAGTTCAGTGCGGTGTGGGGCGCCCACGAAGGCTCGCTGCTGCTGTGGGCGCTGATCCTGGCCGGCTGGAC CTTCGCCGTGGCGATCTTCTCGCGCCATCTGCCGGAAGAGATGCTCGCCCGCGTGCTGGCGGTGATGGGCATGATCAGCA TTGGCTTCCTGCTGTTTCTGATCGTCACCTCCAACCCCTTCGAGCGCCTGCTGCCGAATTCACCGATGGACGGACGCGAC CTCAACCCGCTGCTGCAGGACTTCGGCCTGATCGTCCATCCGCCGATGCTGTACATGGGCTACGTCGGCTTCTCGGTGGC CTTCGCCTTCGCCATTGCCGCACTGCTCGGCGGCAAGCTGGACGCCGCCTGGGCGCGCTGGTCGCGGCCGTGGACCATCG TCGCCTGGGCCTTCCTCGGCATCGGTATCGCCCTGGGCTCCTGGTGGGCCTACTACGAGCTGGGCTGGGGCGGCTGGTGG TTCTGGGACCCGGTGGAGAACGCTTCCTTCATGCCCTGGCTGGTGGGCACCGCCTTGATCCACTCGCTGGCCGTGACCGA GAAGCGTGGTGTGTTCAAGAGCTGGACGGTGCTGCTGGCCATCGCCGCCTTCTCCCTAAGTCTGCTGGGGACCTTCCTGG TACGTTCCGGCGTGCTCACCTCGGTGCATGCCTTCGCCACCGACCCGGAGCGCGGCGTGTTCATCCTCGCCTTCCTGCTG ATCGTGGTGGGCGGTTCGCTGGCGCTGTTCGCGGTGCGTGCGCCTGTGGTCAAGAGCCAGGTGGGCTTCGGCCTGTGGTC GCGCGAGACGCTGCTGCTGGTCAACAACATCGTGCTGGTGGTGTCGGCCGCGATGATCCTGCTCGGCACGCTGTATCCGC TGGTGCTCGATGCCCTGACCGGCGCCAAGCTGTCGGTCGGCCCGCCTTACTTCAACGCGCTATTCCTGCCGCTTATGGCG CTGCTGATGGCGGTGATCAGCATCGGTGTGATCGTGCGCTGGAAGGACACCCCGCTGAACTGGCTGGGCCGCATGCTGGC TCCGGTGCTGGTGGCCAGCGTGGTGCTGGCGCTGATCGCCACCTTCGTCCATGGCGATTTCAACTGGGCGGTGCTGGCCG TGTGCCTGCTGGCGTTCTGGGTGGTCCTGGCCGGGGTGCGCGACATTCTCGACAAGACCCGCCACAAGGGCCTGTTCAAG GGCCTGCCGAGCCTGGGCCGCAGCTACTGGGGCATGCAGATCGCGCACCTGGGTTTCGCCGTGTGCGCCCTGGGTGTGGT GCTGACCAGCCTCGGCAGCTACGAGCGCGACCTGCGCATGGCGCCGGGTGATTCCGTGGAGCTGGGCGGCTATCGCTTCC AGTTCGACGGCGCCGTGCATCACGAAGGCCCCAACTTCATTTCCGACAAGGGCACGGTGCGCGTGTTCGACGGCGAGCGG CAGATCAAGGTGCTGCACCCGGAGAAGCGTCTGTACACCGTGCAGCAGGCCACCATGACCGAGGCTGGCATCGATGCCGG CTTCACCCGTGATCTGTTCGTCGCCCTTGGCGAGCCGCTGGAGCAGGGCGCCTGGGCGGTGCGCGTGCACATCAAACCGT TCGTCCGCTGGATCTGGCTGGGCGCGCTGCTGATGGGTTTTGGTGGCTTCCTCGCCGCGGCCGACAAGCGCTACCGGATC AAGGTCAGAACCCGCGTGCGCGAAGCCCTAGGCATGCAGGAGGCCAGCGCATGA Protein sequence : MIPELGHLAMILALCLCLVQATLPLIGAWRGDHQWMSLAQPAAWGQFVFLLFSFICLTYAFMVDDFSVAYVAHNSNSALP WYYKFSAVWGAHEGSLLLWALILAGWTFAVAIFSRHLPEEMLARVLAVMGMISIGFLLFLIVTSNPFERLLPNSPMDGRD LNPLLQDFGLIVHPPMLYMGYVGFSVAFAFAIAALLGGKLDAAWARWSRPWTIVAWAFLGIGIALGSWWAYYELGWGGWW FWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVLLAIAAFSLSLLGTFLVRSGVLTSVHAFATDPERGVFILAFLL IVVGGSLALFAVRAPVVKSQVGFGLWSRETLLLVNNIVLVVSAAMILLGTLYPLVLDALTGAKLSVGPPYFNALFLPLMA LLMAVISIGVIVRWKDTPLNWLGRMLAPVLVASVVLALIATFVHGDFNWAVLAVCLLAFWVVLAGVRDILDKTRHKGLFK GLPSLGRSYWGMQIAHLGFAVCALGVVLTSLGSYERDLRMAPGDSVELGGYRFQFDGAVHHEGPNFISDKGTVRVFDGER QIKVLHPEKRLYTVQQATMTEAGIDAGFTRDLFVALGEPLEQGAWAVRVHIKPFVRWIWLGALLMGFGGFLAAADKRYRI KVRTRVREALGMQEASA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ccmF | AAN62106.1 | putative cytochrome C-type biogenesis protein CcmF | Not tested | PAGI-2(C) | Protein | 7e-137 | 57 |
| ccmF | YP_217241.1 | cytochrome c-type biogenesis protein | Not tested | SPI-12 | Protein | 8e-123 | 55 |
