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Name : secD (Pmen_3518) Accession : YP_001188998.1 Strain : Pseudomonas mendocina ymp Genome accession: NC_009439 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 3876743 - 3878611 bp Length : 1869 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGCTCAATAAATATCCCCTTTGGAAGTACCTGCTGATCCTCGCCGTATTGGCGATCGGCCTGGTCTACTCCATCCCCAA TCTCTATCCGGATGATCCGGCCGTGCAGATCAGTGGTGCCAGTTCGGCGCTGAGCATCGAGCAGGGCGACGTCGAGCGCG CCAGCAAGGCGCTGCAGGACGCCGGCATCCAGGTCAAGGCTGCCAGCCTCGATGAGCGCGGCCGTGGCGGTCTGATCCGT CTGACCAAGCAGGATGACCAGTTGCCGGCCAAGGACATCGTCCGCCGCGTGCTGGGCGACGACTACGTGGTGGCGCTGAA CCTGGCGCAAACCACTCCCGACTGGCTGCGCAGCCTGGGCGCCAGCCCGATGAAGCTTGGCCTGGACCTGTCCGGTGGCG TGCACTTCCTGCTGGAAGTGGACATGGACAAGGCGCTGGATGTGCGGCGCAAGGTCTACGAAGGCGAGATCAAGAGCCTG CTGCGCAAGGAGCGCATCCGCTACCGCAGCATGCCGGAGCAGGGCGGCCGTATTCAGCTCGGCTTCGCCGACAGCGATAC GCTGGAAAAAGCCCAGCGTCTGATCCGCAAGGACTACAACGATTTCGAGCTGACCACCGTCGAGCGCGGCGGCCAGCAGG TGCTGCAGCTGGCGCTGACTCAGGCGAAGATCGCCGAGATTCGCGAATACTCCATTCGTCAGAACCTCACCACCGTGCGT AACCGCGTCAACGAGCTGGGTGTGGCCGAGCCGCTGGTGCAACGTCAGGGCGCCAACCGCATCGTGGTCGAGCTGCCGGG TGTGCAGGATACCGCCGAAGCCAAGCGTATCCTCGGCAAGACCGCCAACCTGGAGTTCCGCCTGCAGGCCGATCTCGACG CGCCGCGCGGTGCCACCGAGACCTTCGGTTTCCGCGAGGAGGGGCGTCCGCCGGTGCAGCTCGAGCGTGAGCTGATCATC ACCGGTGACCAGGTCACCGATGCCCAGGCCAGCTTCGACGAGAACGGCCGCCCGCAGGTGAACATCCGCCTCGACGGCCA CGGCGGCGATCTGATGAACCGCGCCACGCGCAACAACGTTGGCCGCAGCATGGCGGTGATCTTCATCGAACAGAAGCCGG TCACCCGCTACGTGCGTCAGACCGTGGACGGTGTCGAGCAGGAAGTTGCCGTCTCTTCGTTCGTCGAAGAGAAGAAGATC ATCAGCCTGGCCACCATTCAGTCGGCACTGGGCAGCCAATTCCGCATCACTGGCCTGAACGGCCAGGGTGAGTCCTCGGA ACTGGCGCTGCTGCTGCGCGCTGGTGGTCTGGCCGCGCCAATGTACTTCGCTGAAGAGCGCACCATCGGCCCGAGCCTGG GTGCCGAAAACATCGCCAAGGGTATCGAGTCCACCGAATGGGCGATGATCTTCGTGGCGCTGTTCATCATCGCCATCTAC CGCTTCTTCGGTGTGCTGGCGACCGTGGCGCTGGCCTTCAATCTGGTGCTGCTGGTGGGGCTGATGTCGGCCATTGGCGC GACGCTGACGCTGCCCGGTATCGCCGGTATCGTGCTGACCCTGGGTATGGCGGTGGATGCCAACGTGCTGATCTTCTCGC GCATACGCGAGGAACTGGCCAACGGGCTGCACGTGCAGCGTGCCATCCATGAGGGTTTCGACCGCGCCTACTCGGCGATT CTCGACAGTAACCTGACCACCCTGCTGGTCGGCGGCATCCTGTTCGCCATGGGGACCGGCCCGGTCAAGGGCTTCGCGGT GACCATGTCGCTGGGCATCATCACGTCGATGTTCACTGCCATCATGTTCACCCGTGGTCTGGTCAACCTGATCTTCGGTG GCCGTAACTTCAAGAAGCTGTGGATCTGA Protein sequence : MLNKYPLWKYLLILAVLAIGLVYSIPNLYPDDPAVQISGASSALSIEQGDVERASKALQDAGIQVKAASLDERGRGGLIR LTKQDDQLPAKDIVRRVLGDDYVVALNLAQTTPDWLRSLGASPMKLGLDLSGGVHFLLEVDMDKALDVRRKVYEGEIKSL LRKERIRYRSMPEQGGRIQLGFADSDTLEKAQRLIRKDYNDFELTTVERGGQQVLQLALTQAKIAEIREYSIRQNLTTVR NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLQADLDAPRGATETFGFREEGRPPVQLERELII TGDQVTDAQASFDENGRPQVNIRLDGHGGDLMNRATRNNVGRSMAVIFIEQKPVTRYVRQTVDGVEQEVAVSSFVEEKKI ISLATIQSALGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAENIAKGIESTEWAMIFVALFIIAIY RFFGVLATVALAFNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVDANVLIFSRIREELANGLHVQRAIHEGFDRAYSAI LDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGIITSMFTAIMFTRGLVNLIFGGRNFKKLWI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 79 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 78 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 78 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 78 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 78 |
