|
Name : rpoB (Pmen_3916) Accession : YP_001189395.1 Strain : Pseudomonas mendocina ymp Genome accession: NC_009439 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 4295874 - 4299947 bp Length : 4074 bp Strand : - Note : DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme DNA sequence : ATGGCTTACTCATACACTGAGAAAAAACGTATCCGCAAGGACTTTAGCAAGTTGCCGGATGTCATGGATGTGCCTTACCT CCTGGCCATCCAGCTGGATTCCTATCGCGAATTCCTGCAGCAAGGGGTGAGCAAGGAGCAGTTCCGTGACATCGGCCTGC ATGCGGCCTTCAAATCCGTATTCCCGATCATCAGCTACTCCGGCAACGCCGCCCTGGAGTACGTCGGCTATCGCCTGGGC GAGCCGGCGTTCGACGTCAAGGAGTGCGTCCTGCGTGGCGTGACCTTCGCCGTGCCGCTGCGCGTGAAAGTACGTCTGAT CATTTTCGACAAAGAATCGTCGAACAAAGCGATCAAGGACATCAAAGAGCAGGAAGTGTACATGGGCGAAATTCCGCTCA TGACCGAGAACGGTACCTTCGTCATCAACGGTACCGAGCGCGTGATCGTTTCCCAGCTGCACCGCTCGCCGGGCGTGTTC TTCGACCACGACCGTGGCAAGACCCACAGCTCGGGCAAGCTGCTGTACTCCGCTCGCATCATCCCCTACCGCGGTTCCTG GCTGGACTTCGAGTTCGATCCGAAGGACGCGGTATTCGTGCGTATCGACCGTCGCCGCAAACTGCCGGCGTCCGTCCTGC TGCGCGCGCTCGGCTACAGCACCGAAGAGGTGCTGGATGCCTTCTACGACACCAACGTGTTCCACGTTAAGAACGAGAGC CTGAGCCTGGAGCTGGTGCCTCAGCGTCTGCGTGGTGAAGTCGCGGTCCTGGACATCAAGGACGCCAGCGGCAAGGTGAT CGTGGAGCAGGGCCGTCGTATCACGGCTCGCCACATCAACCAGCTGGACAAGGCTGGCATCAAGGAGCTGGAAGTTCCGC TCGATTACGTCATTGGCCGTACCACTGCCAAGGCCATCGTGCATCCGGCTACCGGCGAGATCATCGCCGAGTGCAACACC GAGCTGACCGCCGACCTGCTGGCCAAGATGGCCAAGGCCAACGTGGTTCGCTTCGAGACCCTGTACACCAACGACATCGA TTGCGGTCCGTTCATCTCCGATACCCTGAAGATCGACAGCACCACCAATCAGCTGGAAGCGCTGGTCGAGATCTACCGCA TGATGCGTCCCGGCGAGCCGCCAACCAAGGACGCTGCCGAGACCCTGTTCAACAACCTGTTCTTCAGCGCCGAGCGTTAC GACCTGTCCGCCGTGGGCCGCATGAAGTTCAACCGTCGTATCGGTCGCACCGAGATCGAAGGTTCGGGCGTGCTGAGCAA GGAAGACATCGTTGCCGTACTCAAGACTCTGGTCGACATCCGTAACGGCAAGGGCATCGTCGACGACATCGACCACCTGG GTAACCGTCGCGTGCGTTGCGTCGGCGAGATGGCCGAGAACCAGTTCCGCGTTGGTCTGGTGCGCGTCGAGCGTGCGGTC AAGGAACGTCTGTCGATGGCCGAAAGCGAAGGCCTGATGCCGCAGGACCTGATCAACGCCAAGCCGGTTGCGGCGGCGGT GAAGGAGTTCTTCGGTTCCAGCCAGCTCTCGCAGTTCATGGACCAGAACAACCCGCTCTCCGAGATCACCCACAAGCGCC GCGTCTCCGCACTCGGCCCGGGCGGTCTGACCCGTGAGCGCGCCGGCTTCGAAGTCCGCGACGTACACCCGACCCACTAC GGCCGCGTGTGCCCGATCGAAACCCCGGAAGGTCCGAACATCGGTCTGATCAACTCGCTGGCTGCCTACGCCCGCACCAA CCAGTACGGCTTCCTGGAAAGCCCGTATCGCGTGGTCAAGGAAGGCAAGGTCACCGACGAGATCGTGTTCCTGTCCGCCA TCGAAGAAGCCGATCACGTGATCGCCCAGGCGTCCGCCACCCTGAACGACAAGGGTGAGCTGGTCGACGAGCTGGTTGCC GTACGTCACCTGAACGAATTCACCGTGAAGGCGCCGGAAGACGTCACCCTGATGGACGTATCGCCGAAGCAGGTAGTCTC GGTTGCCGCCTCGCTGATTCCGTTCCTCGAGCACGACGACGCCAACCGTGCACTCATGGGTTCGAACATGCAGCGTCAGG CTGTACCGACCCTGCGCGCCGACAAGCCGCTGGTAGGTACCGGCATGGAGCGCAACGTCGCCCGTGACTCCGGCGTCTGC GTAGTGGCCCGCCGTGGCGGGGTGATCGACTCGGTCGATGCCAGCCGTATCGTGGTTCGCGTCAACGATGACGAAGTCGA GACTGGCGAAGCCGGTGTCGACATCTACAACCTGACCAAGTACACCCGCTCCAACCAGAACACCTGCATCAACCAGCGTC CGCTGGTGAGCAAAGGTGATCAGGTAGCGCGTGGCGACATCATGGCCGACGGCCCGTCCACCGACATGGGTGAACTGGCG CTGGGTCAGAACATGCGCGTGGCGTTCATGCCGTGGAACGGCTTCAACTTCGAAGACTCCATCTGCCTGTCCGAGCGCGT GGTTCAGGAAGACCGCTTCACCACCATCCACATCCAGGAACTGACCTGTGTGGCGCGTGACACCAAGCTCGGCCCAGAGG AAATCTCCTCTGACATCCCGAACGTGGGTGAAGCGGCTCTGAACAAGCTGGACGAAGCCGGTATCGTCTATGTCGGTGCC GAAGTCGGCCCGGGCGACATCCTGGTCGGTAAGGTCACTCCGAAAGGCGAGACCCAGCTGACTCCGGAAGAGAAGCTGCT GCGTGCGATCTTCGGTGAGAAGGCGTCCGACGTGAAGGACACCTCCCTGCGCGTGCCGACCGGCACCAAGGGTACCGTCA TCGACGTGCAGGTCTTCACCCGTGATGGCGTCGAGCGCGACAGCCGCGCCCTGGCCATCGAGAAGCAGCAGCTGGACGAG ATCCGCAAGGACCTGAACGAAGAGTTCCGCATCGTCGAAGGCGCGACCTTCGAGCGTCTGCGCTCGGCTCTGGTTGGCGC GATCGCCGAAGGCGGCGCTGGTCTGAAGAAAGGCACCGCGATCACCGACGAGTTCCTCGACGGTCTCGAGCGTGGCCAGT GGTTCAAACTGCGCATGGCCGACGACGCCCTGAACGAGCAGCTGGAGAAGGCCCAGGCCTACATCTCCGACCGCCGTCAG ATGCTCGACGACAAGTTCGAAGACAAGAAGCGCAAGCTGCAGCAGGGCGATGACTTGGCGCCGGGCGTGCTGAAGATCGT CAAGGTCTACCTGGCCATCCGCCGTCGCATCCAGCCGGGTGACAAGATGGCCGGTCGTCACGGTAACAAGGGTGTGGTCT CGGTGATCATGCCGGTCGAAGACATGCCGCACGACGCCAACGGCACGCCGGTGGACATCGTTCTGAACCCGCTGGGCGTA CCGTCGCGTATGAACGTCGGTCAGATCCTCGAAACCCACTTGGGCCTCGCGGCCAAGGGCCTGGGCGAGAAGATCAACCG CATGCTCGAAGAGCAGCGCAAGGTCGCCGAACTGCGCAAGTTCCTCGCCGAGATCTACAACGAGATCGGTGGTCGTCAGG AAAACCTCGACGAGTTCTCCGACAACGAGATCCTCGAGCTGGCGAAGAACCTCAAGGGCGGTGTACCGATGGCGACTGCC GTGTTCGACGGCGCCAAGGAAACCGAGATCAAGGCCATGCTGAAGCTGGCCGATCTGCCGGAAAGCGGCCAGATGCGCCT GTTCGACGGTCGTACCGGTAACCAGTTCGAGCGCCCGACCACCGTCGGCTACATGTACATGCTGAAACTGAACCACCTGG TGGACGACAAGATGCACGCCCGTTCCACTGGTTCCTACAGCCTGGTTACCCAGCAGCCGCTGGGTGGTAAGGCGCAGTTC GGTGGTCAGCGCTTCGGGGAGATGGAGGTCTGGGCGCTGGAAGCCTACGGTGCCGCCTACACCCTGCAGGAAATGCTGAC CGTGAAGTCGGACGACGTGAACGGCCGTACCAAGATGTACAAGAACATCGTGGATGGCGATCACCGTATGGAGCCGGGCA TGCCCGAGTCCTTCAACGTACTGATCAAAGAGATCCGTTCGCTCGGCATCGACATCGATCTGGAAACCGAATAA Protein sequence : MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQQGVSKEQFRDIGLHAAFKSVFPIISYSGNAALEYVGYRLG EPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVF FDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDAVFVRIDRRRKLPASVLLRALGYSTEEVLDAFYDTNVFHVKNES LSLELVPQRLRGEVAVLDIKDASGKVIVEQGRRITARHINQLDKAGIKELEVPLDYVIGRTTAKAIVHPATGEIIAECNT ELTADLLAKMAKANVVRFETLYTNDIDCGPFISDTLKIDSTTNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERY DLSAVGRMKFNRRIGRTEIEGSGVLSKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHY GRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVKEGKVTDEIVFLSAIEEADHVIAQASATLNDKGELVDELVA VRHLNEFTVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC VVARRGGVIDSVDASRIVVRVNDDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGDQVARGDIMADGPSTDMGELA LGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEISSDIPNVGEAALNKLDEAGIVYVGA EVGPGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKQQLDE IRKDLNEEFRIVEGATFERLRSALVGAIAEGGAGLKKGTAITDEFLDGLERGQWFKLRMADDALNEQLEKAQAYISDRRQ MLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGV PSRMNVGQILETHLGLAAKGLGEKINRMLEEQRKVAELRKFLAEIYNEIGGRQENLDEFSDNEILELAKNLKGGVPMATA VFDGAKETEIKAMLKLADLPESGQMRLFDGRTGNQFERPTTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQF GGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 74 |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 74 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_001189395.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 95 |
| rpoB | YP_001189395.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 74 |
| rpoB | YP_001189395.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 74 |
| rpoB | YP_001189395.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 74 |
| rpoB | YP_001189395.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 74 |
| rpoB | YP_001189395.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 74 |
| rpoB | YP_001189395.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 74 |
| rpoB | YP_001189395.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 73 |
| rpoB | YP_001189395.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 73 |
| rpoB | YP_001189395.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 73 |
| rpoB | YP_001189395.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 73 |
| rpoB | YP_001189395.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 73 |
| rpoB | YP_001189395.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 73 |
| rpoB | YP_001189395.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 72 |
| rpoB | YP_001189395.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 69 |
| rpoB | YP_001189395.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 67 |
| rpoB | YP_001189395.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 65 |
| rpoB | YP_001189395.1 | DNA-directed RNA polymerase subunit beta | CP001581.1.gene3846. | Protein | 0.0 | 48 |
| rpoB | YP_001189395.1 | DNA-directed RNA polymerase subunit beta | AM180355.1.gene120.p | Protein | 0.0 | 48 |
| rpoB | YP_001189395.1 | DNA-directed RNA polymerase subunit beta | AE016830.1.gene3155. | Protein | 0.0 | 47 |
| rpoB | YP_001189395.1 | DNA-directed RNA polymerase subunit beta | CP003583.1.gene2745. | Protein | 0.0 | 46 |
