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Name : Pmen_0048 (Pmen_0048) Accession : YP_001185554.1 Strain : Pseudomonas mendocina ymp Genome accession: NC_009439 Putative virulence/resistance : Virulence Product : type III secretion protein SpaR/YscT/HrcT Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4791 EC number : - Position : 44699 - 45499 bp Length : 801 bp Strand : + Note : TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein DNA sequence : ATGCCATTGGATGCCCAGGCCGCTTTCGAGCTGATGCTGGGGCTAGGTCTCGGCGTGGCCCGCCTGCTGCCCTGCATGCT GCTGGTGCCTGCATTCTGTTTCAAACACCTCAAAGGCATTCTGCGTTATGGCGTGGTGATCGCCGTGGCGATGATCCCGG CCCCTTCGATCGGCGAGGCCCTGGCCAGTGAGGGGGCCAGTTTCGGCGTGGTCATGGGGCTGCTGATCAAGGAGGTCATG CTCGGTGCGCTGCTTGGCGTGTTGCTGCACATGCCGTTCTGGATGTTCGCCTCGGTCGGCGCTTTGCTCGACAGTCAGCG TGGTGCTCTCAGTGGTGGTCAGCTCAACCCGGCGCTCGGCCCGGACGTGACGCCGATGGGCGAGCTGCTGCAGGAAGTGC TGGTAATGCTGGTCATTCTGTTCGGCGGGTTACCTTTGATTACCCAGGTGATCTGGGACAGCTACTTGATCTGGCCGCCC ACGGTCTGGCTGCCGATCCTGACCGAGGACGGCCTGGGCGTGCTGCTCTCGCAACTCAGCCGAACGTTGCAGCACATGCT GCTCTATGCCGCGCCCTTCATTGCCCTGCTGCTGCTGATCGAGGCGGCCATGGCGATCATCAGTCTGTATGCGCAACAAC TGAACGTATTCATCCTGGCAATGCCGGCCAAGAGCATTGCCGGGCTGGCTTTCTTGCTGATCTATCTGCCCACGCTTCTC GAACTGGGTGGTGGGGAGGTTCAGCAGTTTCAGCTTCTCAAGCAACTGCTGGGCAGCCTCGTCCAGGTGCCGGTGCCATG A Protein sequence : MPLDAQAAFELMLGLGLGVARLLPCMLLVPAFCFKHLKGILRYGVVIAVAMIPAPSIGEALASEGASFGVVMGLLIKEVM LGALLGVLLHMPFWMFASVGALLDSQRGALSGGQLNPALGPDVTPMGELLQEVLVMLVILFGGLPLITQVIWDSYLIWPP TVWLPILTEDGLGVLLSQLSRTLQHMLLYAAPFIALLLLIEAAMAIISLYAQQLNVFILAMPAKSIAGLAFLLIYLPTLL ELGGGEVQQFQLLKQLLGSLVQVPVP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcT | AAG33886.1 | HrcT | Virulence | Hrp PAI | Protein | 2e-75 | 73 |
| hrcT | ABQ88361.1 | HrcT | Virulence | Hrp PAI | Protein | 1e-70 | 73 |
| hrpX | AAB05077.1 | HrpX | Virulence | Hrp PAI | Protein | 1e-70 | 73 |
| hrcT | NP_791220.1 | type III secretion protein HrcT | Virulence | Hrp PAI | Protein | 2e-75 | 73 |
| hrcT | AAT96148.1 | HrcS | Virulence | T-PAI | Protein | 5e-74 | 70 |
| hrcT | AAT96202.1 | HrcT | Virulence | T-PAI | Protein | 5e-74 | 70 |
| hrcT | AAT96264.1 | HrcT | Virulence | S-PAI | Protein | 9e-45 | 50 |
| hrcT | AAT96305.1 | HrcT | Virulence | S-PAI | Protein | 9e-45 | 50 |
| hrcT | AAT96345.1 | HrcT | Virulence | S-PAI | Protein | 9e-45 | 50 |
| hrcT | ABA47281.1 | HrcT | Virulence | S-PAI | Protein | 9e-46 | 50 |
| hrcT | AAB06007.1 | HrcT | Virulence | Hrp PAI | Protein | 9e-40 | 50 |
