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Name : lysS (Fjoh_1919) Accession : YP_001194270.1 Strain : Flavobacterium johnsoniae UW101 Genome accession: NC_009441 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 2217648 - 2219351 bp Length : 1704 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGGCATTATCAGAACAAGAAATCATCAGAAGAGAAAAACTTCAAAACTTACGCAATCTGGGAATCAATCCTTATCCAGC TAATCTTTTTCCTGTAAATCATACTTCGAAGCAGATAAAGGAAACTTTTGAGGAAGGTAAGAAGGTTATCGTTGCGGGAC GTTTGATGAGTGTTCGTGATCAGGGTAAAGCTTGTTTTGCTGAATTACAAGACAGCGAAGGACGTATTCAATTGTACGTA AACCGTGATGTTTTATGCGAAGGCGATGATAAAACTTTATACAACCAAGTATTCAAAAAATTAACCGATTTAGGAGATTT TATTGGTATTGAAGGTGAATTGTTTACTACACAAGTTGGAGCAAAATGTATTCGTGTAACCGGCTTTACTTTCTTAAGCA AAACATTACGTCCGTTACCTTTACCAAAAGTTGACGAAGACGGAAATGTACACGATGCTTTCAACGATGCTGAATTGCGT TATAGAATGCGTTATGTAGATTTAACTGTAAATCCGCAGGTAAAAGAAACGTTTATTAAACGTACAAAGTTATTTACTGC AATGCGTGGTTATTTTAACGATGCTGGATATCTTGAAGTTGATACTCCGGTTTTACAGTCAATTCCTGGTGGAGCTTCGG CAAGACCATTTATTACGCACCATAACTCACTTGATATTCCGCTTTACATGCGTATTGCGAATGAGTTGTATTTAAAAAGA TTAATTGTTGGTGGATTCGAAGGTGTTTATGAGTTCTCTAGAAACTTCCGTAACGAAGGTATGGACAGAACGCATAATCC TGAGTTTACTGCAATGGAAATATATGTAGCTTATAAAGACTACAACTGGATGATGGAATTTGCTGAAGGTTTACTAGAGC ATTGTGCAATTGCTGTTAACGGAACTAGCGAAGTTACTTTTGGCGAGCACAAAATCAACTTTAAAGCGCCTTATGCACGT GTTACAATGACAGACTCTATCAAGCATTTTACTGGTTTCGACATTTCTGGAAAAACAGAACAAGAATTGTTTGAAGCGGC TAGAGGAATGGGAATCGAGGTTGACGAAACAATGGGTAAAGGAAAATTAATTGATGAGATTTTTGGAGCTAAATGTGAAG GAAATTATATTCAGCCAACTTTCATTACAGATTATCCAAAAGAAATGTCTCCGCTTTGTAAAGAACACAGAGATAATCCA GATTTGACTGAGCGTTTTGAATTAATGGTTTGCGGTAAAGAAATTGCAAATGCATATTCTGAATTAAATGACCCAATCGA TCAAAGAGAGCGTTTTGAAGACCAAATGCGTCTTTCTGAAAAAGGTGATGACGAAGCAAACGGAATTATCGACGAAGATT TCTTAAGAGCACTTGAGTACGGTATGCCTCCAACATCTGGAATGGGAATTGGAATGGATCGTTTAATTATGTATTTAACA AACAATGCTTCTATTCAGGAAGTTTTATTGTTCCCTCAAATGCGTCCTGAGAAAAAACAAGCTCAGATTGAACTTTCTGA TGAAGAAAAATTTATCATTGACCTGCTTACGAAAAATGAAAATAGAATGGATTTAACGCAGCTAAAAATTACAGCTAACT TAAGCGGTAAAAAATGGGATGCGTCTATGAAAAACTTATCTAAACACGGTTTAACTAAAGTTGTTGTTGACGGAGAGTTT AAATTTGTGGAACTAGTTGGTTAA Protein sequence : MALSEQEIIRREKLQNLRNLGINPYPANLFPVNHTSKQIKETFEEGKKVIVAGRLMSVRDQGKACFAELQDSEGRIQLYV NRDVLCEGDDKTLYNQVFKKLTDLGDFIGIEGELFTTQVGAKCIRVTGFTFLSKTLRPLPLPKVDEDGNVHDAFNDAELR YRMRYVDLTVNPQVKETFIKRTKLFTAMRGYFNDAGYLEVDTPVLQSIPGGASARPFITHHNSLDIPLYMRIANELYLKR LIVGGFEGVYEFSRNFRNEGMDRTHNPEFTAMEIYVAYKDYNWMMEFAEGLLEHCAIAVNGTSEVTFGEHKINFKAPYAR VTMTDSIKHFTGFDISGKTEQELFEAARGMGIEVDETMGKGKLIDEIFGAKCEGNYIQPTFITDYPKEMSPLCKEHRDNP DLTERFELMVCGKEIANAYSELNDPIDQRERFEDQMRLSEKGDDEANGIIDEDFLRALEYGMPPTSGMGIGMDRLIMYLT NNASIQEVLLFPQMRPEKKQAQIELSDEEKFIIDLLTKNENRMDLTQLKITANLSGKKWDASMKNLSKHGLTKVVVDGEF KFVELVG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 3e-98 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001194270.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-98 | 45 |
