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Name : rpoB (Fjoh_1943) Accession : YP_001194294.1 Strain : Flavobacterium johnsoniae UW101 Genome accession: NC_009441 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 2243449 - 2247261 bp Length : 3813 bp Strand : + Note : DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme DNA sequence : ATGATAACAAATCAGACTGAAAGATTGAATTTTGCCTCTACAAAAAATATCCCTGACTATCCAGATTTCTTAGATGTTCA GGTTAAATCTTTTAAAGATTTCTTTCAATTAGAAACGAAATCTGACGAAAGAGGCAACGAAGGGTTATACAACACCTTCA TGGAAAACTTCCCAATTACAGATACAAGAAACAACTTTGTATTGGAATTCCTAGATTATTTTGTTGATCCGCCACGTTAT ACAATTCAAGAATGTATAGAGAGAGGTCTTACTTATAGTGTGCCTTTAAAAGCTAGGTTAAAACTATACTGTACAGATCC AGAACACGAAGATTTTGAAACAATTGTACAAGATGTTTATCTTGGAACAATTCCTTACATGACTCCTAGTGGTACTTTTG TTATTAATGGTGCCGAGTGTGTTGTAGTATCTCAATTACACCGTTCTCCAGGGGTTTTCTTTGGACAGTCATTCCACGCA AATGGAACTAAACTTTATTCTGCGAGAGTAATTCCTTTTAAAGGATCTTGGATAGAATTTTCTACAGATATCAACAGCGT AATGTACGCGTATATCGATAGAAAGAAAAAATTACCTGTTACAACTTTATTCCGTGCTATTGGTTTCGAAAGAGATAAGG ATATCCTTGAAATTTTCGACTTAGCAGAAGAAATTAAAGTTTCTAAAACAGGTATTAAGAAATATATTGGAAGAAGACTT GCCGCGCGTGTTTTGAACACATGGCACGAGGATTTCGTAGATGAGGATACTGGAGAGGTAGTTTCTATCGAGCGTAACGA AATCATCCTTGACCGTGATACAATTATCGACAAAGATAATGTTGAAGAGATCATCGATTCTAACGTAAAATCTATTTTGT TGCACAAGGAGGATAATAACCAAGCAGATTATGCTATTATCCACAATACGTTACAAAAAGATCCAACAAACTCTGAAAAA GAAGCTGTAGAGCACATTTACCGTCAGTTGCGTAACGCTGAACCGCCTGATGAGGAAACTGCTCGTGGTATTATAGATAA ATTGTTCTTCTCTGATCAACGTTATAACTTAGGTGAAGTTGGTCGTTACAGAATGAACAAAAAATTAGATTTAGATATCC CTATGGATAAGCAAGTGCTTACTAAAGAGGATATCATTACAATCGTTAAATATTTGATCGAGTTGATCAACTCTAAAGCA GAGATTGATGATATTGATCACTTATCAAACCGTCGTGTTAGAACAGTTGGTGAACAATTGTCTCAACAATTCGGTGTTGG TTTAGCACGTATGGCTAGAACTATTCGTGAGAGAATGAACGTTAGAGATAACGAGGTGTTTACACCAATTGATTTGATTA ATGCTAAAACATTATCATCAGTTATCAACTCTTTCTTTGGTACTAACCAGTTATCTCAATTTATGGATCAAACGAATCCA TTAGCTGAGATTACACACAAAAGAAGACTTTCTGCACTTGGACCAGGTGGACTTTCGAGAGAGAGAGCTGGTTTCGAGGT TCGTGACGTTCACTATACTCACTATGGTCGATTATGTCCGATTGAAACTCCTGAGGGACCAAACATTGGTTTGATTTCAT CTCTTGGTGTTTACGCAAAAGTAAACGGAATGGGATTCATTGAAACTCCATACCGTAAAGTTACAGATGGTGTTGTTGAT TTAGAAAGCGCACCAATCTATTTAAGTGCTGAAGAAGAAGAAGGTAAAATGATTGCTCAGGCAAACATTGAAATGGATGC TTCTGGTAAAATTACAGCTAGTAATGTTATTGCTCGTGAAGAGGGTGACTTCCCAGTTGTTGAACCAAGTTCAGTACATT ATACAGACGTTGCTCCTAACCAGATCGCTTCGATTTCTGCATCTTTGATTCCTTTCTTGGAGCATGATGATGCGAACCGT GCGTTGATGGGATCGAACATGATGCGTCAGGCAGTTCCTTTGATCCGTCCTGAAGCACCGATTGTTGGTACAGGTTTAGA GCGTCAGGTAGCTTCAGATTCAAGAGTATTAATCAATGCTGAAGGGCATGGTACTGTTGAATACGTAGATGCTAATATCA TTACTATTAAATACGATCGTACAGAAGACGAGAGAATGGTTAGTTTTGATGCTGATGAGAAAACGTACAACTTAATTAAA TTTAGAAAAACCAATCAAGGTACAAGTATCAACTTGAAGCCTATCGTAAGAAGAGGTGATAGAGTTGTTCCTGGACAAGT ATTATCTGAAGGATATGCTACTCAAAATGGAGAATTAGCTTTAGGTAGAAACTTAAAAGTTGCGTTCATGCCATGGAAAG GGTACAACTTCGAGGATGCGATTGTAATTTCTGAGAAAGTAGTTCGCGATGATATTTTTACATCTATCCACGTTGATGAT TATTCATTAGAGGTTAGAGATACTAAGTTAGGTAACGAAGAGTTAACAAACGATATTCCTAACGTTTCTGAAGAAGCTAC TAAAGATTTAGATGAAAACGGTATGATCAGAATTGGAGCAGAGGTTAAACCTGGCGACATTTTGATTGGTAAAATTACGC CAAAAGGAGAATCAGATCCTACTCCAGAGGAGAAATTGCTTCGTGCAATCTTCGGAGATAAAGCGGGTGATGTAAAAGAT GCTTCATTAAAAGCTTCTCCATCTTTACACGGTGTAGTTCTTGACAAAAAATTATTTGCAAGAGCCGTAAAAGATAAACG TAAACGTACTCAAGATAAAGATGCTTTAGGCGCTTTAGAAATGGAATTCGAAACTAAATTTGTTGAATTAAAAGACAGAT TAGTTGAGAAATTATTCTTGATCGTTAACGGAAAAACATCTCAAGGTGTAATGAATGATTTGGGTGAAGAAGTTTTACCA AAAGGTAAAAAATATACTCAAAAAATGCTTTACGCAGTAGAAGATTTTGCTCACTTAAGCAAAGGTCAATGGGTTGCTGA TGACGCTACTAATAAAATGGTTAATGATTTAATTCATAACTATAAAATTAAGCTGAACGACTTACAAGGAGCTTTAAGAA GAGAGAAATTCACTATTACGGTTGGAGATGAATTACCATCTGGAATCTTGAAGTTGGCTAAAATCTATATCGCTAAAAAA CGTAAGTTAAAAGTTGGTGATAAAATGGCAGGACGTCACGGTAACAAAGGTATTGTTGCTAGAATCGTTCGTCACGAAGA TATGCCTTTCTTAGAAGATGGAACACCAGTAGATATTGTATTGAATCCACTTGGGGTACCTTCACGTATGAACATTGGTC AGATTTATGAGACTGTTCTTGGATGGGCTGGTATGAACTTGGGTAGAAAATTTGCTACTCCAATTTTCGACGGTGCTTCT CTTGACGAGATCAACGCTTTGACTGATGAGGCTAACGTACCACGTTTCGGGCATACATATCTTTATGATGGTGGAACTGG AGAGCGTTTTGCACAAAAAGCAACTGTTGGTGTAATTTACATGCTTAAATTAGGACACATGGTTGATGATAAGATGCACG CACGTTCTATCGGACCATATTCATTGATTACGCAACAGCCACTTGGAGGTAAGGCTCAATTTGGAGGTCAGCGTTTTGGA GAGATGGAGGTTTGGGCACTTGAGGCTTATGGAGCTTCTAGTACTTTACGTGAAATCTTAACTGTTAAGTCTGATGACGT TATTGGTAGAGCTAAAACTTACGAAGCTATCGTTAAGGGTGAAACTATGCCAGAACCAGGTTTACCAGAATCATTCAATG TATTAATGCACGAATTGAAAGGTCTAGGTTTAGATCTTCGTTTGGAAGAATAA Protein sequence : MITNQTERLNFASTKNIPDYPDFLDVQVKSFKDFFQLETKSDERGNEGLYNTFMENFPITDTRNNFVLEFLDYFVDPPRY TIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDVYLGTIPYMTPSGTFVINGAECVVVSQLHRSPGVFFGQSFHA NGTKLYSARVIPFKGSWIEFSTDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEIKVSKTGIKKYIGRRL AARVLNTWHEDFVDEDTGEVVSIERNEIILDRDTIIDKDNVEEIIDSNVKSILLHKEDNNQADYAIIHNTLQKDPTNSEK EAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEVGRYRMNKKLDLDIPMDKQVLTKEDIITIVKYLIELINSKA EIDDIDHLSNRRVRTVGEQLSQQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLGVYAKVNGMGFIETPYRKVTDGVVD LESAPIYLSAEEEEGKMIAQANIEMDASGKITASNVIAREEGDFPVVEPSSVHYTDVAPNQIASISASLIPFLEHDDANR ALMGSNMMRQAVPLIRPEAPIVGTGLERQVASDSRVLINAEGHGTVEYVDANIITIKYDRTEDERMVSFDADEKTYNLIK FRKTNQGTSINLKPIVRRGDRVVPGQVLSEGYATQNGELALGRNLKVAFMPWKGYNFEDAIVISEKVVRDDIFTSIHVDD YSLEVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKD ASLKASPSLHGVVLDKKLFARAVKDKRKRTQDKDALGALEMEFETKFVELKDRLVEKLFLIVNGKTSQGVMNDLGEEVLP KGKKYTQKMLYAVEDFAHLSKGQWVADDATNKMVNDLIHNYKIKLNDLQGALRREKFTITVGDELPSGILKLAKIYIAKK RKLKVGDKMAGRHGNKGIVARIVRHEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETVLGWAGMNLGRKFATPIFDGAS LDEINALTDEANVPRFGHTYLYDGGTGERFAQKATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG EMEVWALEAYGASSTLREILTVKSDDVIGRAKTYEAIVKGETMPEPGLPESFNVLMHELKGLGLDLRLEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 45 |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 46 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 46 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 46 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 46 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 46 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 45 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 45 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 45 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 45 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 45 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 45 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 45 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 45 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 45 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 45 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 45 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 44 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | CP001581.1.gene3846. | Protein | 4e-173 | 43 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_009632.5315067.p0 | Protein | 3e-174 | 42 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_009782.5559150.p0 | Protein | 3e-174 | 42 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_002758.1120515.p0 | Protein | 2e-173 | 42 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_002953.2862188.p0 | Protein | 3e-174 | 42 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_002951.3236234.p0 | Protein | 3e-174 | 42 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_007793.3914836.p0 | Protein | 3e-174 | 42 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_003923.1002608.p0 | Protein | 3e-174 | 42 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_002952.2860169.p0 | Protein | 2e-174 | 42 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_009641.5330265.p0 | Protein | 3e-174 | 42 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_009487.5169226.p0 | Protein | 3e-173 | 42 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_010079.5776819.p0 | Protein | 3e-174 | 42 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_013450.8613267.p0 | Protein | 3e-174 | 42 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_007622.3792928.p0 | Protein | 3e-174 | 42 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_002745.1123305.p0 | Protein | 3e-174 | 42 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_007795.3920377.p0 | Protein | 3e-174 | 42 |
| rpoB | YP_001194294.1 | DNA-directed RNA polymerase subunit beta | NC_012469.1.7686402. | Protein | 4e-167 | 41 |
