Gene Information

Name : csoS1C (BRADO2280)
Accession : YP_001204352.1
Strain : Bradyrhizobium sp. ORS278
Genome accession: NC_009445
Putative virulence/resistance : Virulence
Product : major carboxysome shell protein 1C
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4577
EC number : -
Position : 2429060 - 2429368 bp
Length : 309 bp
Strand : +
Note : Evidence 2b : Function of strongly homologous gene; PubMedId : 7934888, 12917641; Product type r : regulator

DNA sequence : 
ATGATCGAGACACGCGGCCTTGTGCCGGCGATCGAGGCGGCGGACGCGATGACCAAGGCCTCCGAGGTGCGGCTGATCGG
CCGGCAGTTCGTCGGCGGCGGCTACGTCACAGTGATGGTGCGCGGCGAGACCGGCGCGGTCAACGCCGCGGTGCGCGCCG
GCGCCGATGCCTGCGAGCGCGTCGGCGACGGCCTGGCGGCCGCGCATATCATCGCGCGCCCGCACATCGAGGTCGAGCAC
GTGCTGCCGCGACCGGGCGTGACGCGTCTCGAGGACCAGAGCATGCCGCGCATTCCGGCGGCAGAGTGA

Protein sequence : 
MIETRGLVPAIEAADAMTKASEVRLIGRQFVGGGYVTVMVRGETGAVNAAVRAGADACERVGDGLAAAHIIARPHIEVEH
VLPRPGVTRLEDQSMPRIPAAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 6e-10 53
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 3e-10 49
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 2e-09 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
csoS1C YP_001204352.1 major carboxysome shell protein 1C VFG1596 Protein 2e-10 53
csoS1C YP_001204352.1 major carboxysome shell protein 1C VFG1597 Protein 1e-10 49
csoS1C YP_001204352.1 major carboxysome shell protein 1C VFG1598 Protein 9e-10 45