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Name : secD (DNO_0039) Accession : YP_001208976.1 Strain : Dichelobacter nodosus VCS1703A Genome accession: NC_009446 Putative virulence/resistance : Unknown Product : preprotein translocase, SecD subunit Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 44469 - 46334 bp Length : 1866 bp Strand : - Note : identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR01129 DNA sequence : ATGCCTAAACCATTTACTCCTTGGAAGTATGCCTTAATTGTGATGGTGCTTTTACTGGGACTACTTTTTGCGCTGCCCAA TTGGTATGGTAAAAGCCCTGCCGTGCAAATGCGTTTCACCGCGACGCCGGCAGAACAAAATACCGTCGATCGCATCGCTT CTTTACTTTCCGCAGAAAAAATTCCCTATAAAAATATCGTCCGCAGCGCCGAAAATATCGATATTTTATTCGCGCAAACC GATGAACAAATTGAAGCTAAAGATGTGCTTGCCAAACATTATCCCGATGCCGAAATCAGCGTTAACCTGCTCGCTAATAC ACCGCGCTGGATGCAAGCGCTCGGGCTGGATCCTGCTAATTTAGGTTTGGATTTGCGCGGTGGCGTATCCTTTTTATTGC AAGTGGACAGCAAAGAATTATTGGAACGCCGATCCGCAGAATTACTCGATACGTTAAGAGCAACGTTGCAAGAAAAATCT TTGCCGCATATTCGCTTGGAAAATGCGGATAATGGCGGCGCATTAGTTTGGTTTCAAAGCCAAGAAGAACGCGCCAATGC TTTAGAAACGCTTTATTCTCGGTTGCCCAAAGGCGTGCAACAATTTGATGCCGAACGCGATGGACAATTTGGTTTGCGTT TTGTTTATTCTGAAGAAGCCATCAATGCTGCTAAACGCCGCGCTGCCGATCAAAACCGTATGCGCATGGCGAGTCGCGTT AACAGTTTGGGCGTTGCCGAACCTTCCGTTCAAGTCGTTGGCAATGACCGCATTTTAATTCAATTGCCTGGAATTCAAGA CGTCAGCAAAGCTAAAGAAATTTTAGGTTCTACCGCAACTTTGGAATTTTATATGGTAGACGACAAAGCAACGCCCGCCG ATATTGCAAACGCCGTGCGCTTAAAACGTCCACCATTTGGCGATAAATTGGGCTTTTTTGAAGACGGCACCCCGATTTTA CTCAAACGGCGCGTAGTGATGAGCGGCGACCACATCATCGATGCGAGCGCGGTTTATGGTCAAGGACAACCGCAAGTAAA CGTTGTTTTGGATTCGGCTGGTGGCGCGACCATGTCGGAAATTACGCGTAATAACATCGGAAAACCCATGGCAACCATGT ATGTGGAATATTTACCCGTTGAAAAAACCGATGCCGCCGGTGAAACGCAAACCGATGTCGAAAAACGTGAAACCGTCGCC AATTCCGCCACCATTCAAGGGCAGTTTTCCAGTAATTTCCAAATTACGGGAGTGACGCCTTTTGAACGCGCCCAAAAATT AGCCGCGACGCTGCGCGCGGGTTCATTAATTGCGCCGGTCTACATCATTGAAGAACGCACCATCGGACCTTCTGCAGGTC AACAAAATATCGATCAAGGCGTGCATGCTTCTTTATTAGGATTATTTGCCATCGCCGTGTTTATGTTGGTTTACTACAAT AAATTGGGATTTTATTCCGTCATCGCGTTGACGTTTAACCTCATTTTATTGATTGCTTCCATTTCTTTATTAGGCGCAAC GTTAACATTACCAGGAATCGCGGGGATCGTGTTGACGCTGGGCATGGCAGTTGATGCGAACGTTTTAATTTATGAGCGCA TTCGTGAAGAACTTGCCGCCGATCGTCCGATCAAAGAATCAATTCGCATGGGATTTAACGGCGCATTGTCTTCCATTGTT GATGCGAATATCACCACTTTAATCGTCGGCGTTTTATTGTTTATTTTTGGCGCCGGCCCTATCAAAGGATTTGCGGTGAC TTTATCCGTGGGCATTATGACTTCAATGTTTACCGCGGTTTACGTCACCCGTGCGTTAACAGAATTCTTTTTATTAAGAC AAGCGCAGCCGACTATAAAACTGTGA Protein sequence : MPKPFTPWKYALIVMVLLLGLLFALPNWYGKSPAVQMRFTATPAEQNTVDRIASLLSAEKIPYKNIVRSAENIDILFAQT DEQIEAKDVLAKHYPDAEISVNLLANTPRWMQALGLDPANLGLDLRGGVSFLLQVDSKELLERRSAELLDTLRATLQEKS LPHIRLENADNGGALVWFQSQEERANALETLYSRLPKGVQQFDAERDGQFGLRFVYSEEAINAAKRRAADQNRMRMASRV NSLGVAEPSVQVVGNDRILIQLPGIQDVSKAKEILGSTATLEFYMVDDKATPADIANAVRLKRPPFGDKLGFFEDGTPIL LKRRVVMSGDHIIDASAVYGQGQPQVNVVLDSAGGATMSEITRNNIGKPMATMYVEYLPVEKTDAAGETQTDVEKRETVA NSATIQGQFSSNFQITGVTPFERAQKLAATLRAGSLIAPVYIIEERTIGPSAGQQNIDQGVHASLLGLFAIAVFMLVYYN KLGFYSVIALTFNLILLIASISLLGATLTLPGIAGIVLTLGMAVDANVLIYERIREELAADRPIKESIRMGFNGALSSIV DANITTLIVGVLLFIFGAGPIKGFAVTLSVGIMTSMFTAVYVTRALTEFFLLRQAQPTIKL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 2e-76 | 41 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 2e-76 | 41 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 2e-76 | 41 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 4e-76 | 41 |
