Gene Information

Name : VC0395_0082 (VC0395_0082)
Accession : YP_001214923.1
Strain :
Genome accession: NC_009456
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3272
EC number : -
Position : 89426 - 90394 bp
Length : 969 bp
Strand : -
Note : identified by match to protein family HMM PF04463; match to protein family HMM PF08349

DNA sequence : 
GTGTTGGAGACTCGTATGCAGACCACGCCACTCAAAATTGGGATCAGTGCTTGTCTACTTGGAGCAAAAGTACGCTTCGA
TGGCGGGCATAAAATTAGCCACTTCGTGACCAATGAGCTCGATCGTTACGCGGAGTTTGTTTCTGTTTGTCCAGAAATGG
GAATGGGGCTACCTGTTCCGCGTCCCACATTACGACTTATCTCGGAAAATGAACGGATTGCGTTGGTGGAAACCAAAGAT
AGCTCGCGTGATCACACCGCAGCGTTAGAGAGTTACTCACAGCAGAAAGTTGCTGAGTTACAACATGCTGAGTTGTGTGG
CTACATCGTCTGCGCAAAATCACCCAGTTGTGGTATGGAGCGTGTCAAAGTCTACAAGCACAATGGCACCGAAAAAGACG
GTGTTGGCGTCTATACCCGAATTTTGATGGAGAAAATGCCGTGGCTACCGATTGAAGAAGATGGTCGATTGAATGATCCG
GTCTTGCGGGAAAATTACATCACCCGAGTTTTCTGTTTGCATGATTTTTACACCAGCATGGGCGATGCGCCGAGCGCGAA
AAAAATCGTCGAATTTCACTCTCGCTACAAATTAACCCTGATGGCACATAACCCGCAGGCGTATCGCGCGTTAGGCCGCT
TAGTGGCGAATGTGAAACAGTATCCACTGGATTCTTTTATCCAAGAGTACCGCTTAGGTTTGATGCAAGCTCTGGCTCAC
CGTGCTAGCCGCAAAAATAACACGAATGTGCTGATGCATTTGCAAGGTTATTTCAAGCGCTCGCTGAACAAATTACAAAA
AGCCGAACTGGCTCAAGTGATCGAGAGCTATCGGGTGGGTGAGCTGCCACTGTTAGCGCCCATCACGCTACTCAAACATT
ATCTCGCTCTGTTTCCTGATGCTTATCTCGCTCAGCAGCGCTACCTAAACCCTTATCCTCAGGAGTTGAAACTACGTTAT
GGTTTGTGA

Protein sequence : 
MLETRMQTTPLKIGISACLLGAKVRFDGGHKISHFVTNELDRYAEFVSVCPEMGMGLPVPRPTLRLISENERIALVETKD
SSRDHTAALESYSQQKVAELQHAELCGYIVCAKSPSCGMERVKVYKHNGTEKDGVGVYTRILMEKMPWLPIEEDGRLNDP
VLRENYITRVFCLHDFYTSMGDAPSAKKIVEFHSRYKLTLMAHNPQAYRALGRLVANVKQYPLDSFIQEYRLGLMQALAH
RASRKNNTNVLMHLQGYFKRSLNKLQKAELAQVIESYRVGELPLLAPITLLKHYLALFPDAYLAQQRYLNPYPQELKLRY
GL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orf319 NP_460354.1 inner membrane protein Not tested SPI-2 Protein 3e-78 51
SC1410 YP_216397.1 inner membrane protein Not tested SPI-2 Protein 2e-78 51
ORF 319 CAB37410.1 - Not tested SPI-2 Protein 3e-78 51
STY1731 NP_456139.1 putative pathogenicity island protein Not tested SPI-2 Protein 4e-78 51
t1257 NP_805060.1 pathogenicity island protein Not tested SPI-2 Protein 4e-78 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VC0395_0082 YP_001214923.1 hypothetical protein VFG0490 Protein 1e-78 51