|
Name : secD (VC0395_A0272) Accession : YP_001216228.1 Strain : Genome accession: NC_009457 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 286549 - 288402 bp Length : 1854 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : GTGCTAAACCGTTATCCGTTATGGAAGTATCTGATGGTGATGTTAACCATCGCCGTTGCAGCCTTGTATGCACTTCCAAA TATCTACGGTGAAGATCCAGCTATCCAAATAACAGGGGCGCGTGGCGCCTCTGTTGATATGTCAACGCTGGATGCTGTCA CCGATGCGCTCAATAAAGCGCAACTCTCCCAAAAATCCATTGCTCTTGAAAATGGCTCAATCCTTGTTCGTTTCAATGAT ACGGATACGCAAATCAGCGCCCGAGATATCATCAGTGAAGCGTTAGGTAAGGATAAAATCGTCGCGTTAAACCTCGCTCC TTCAACGCCAGATTGGCTAGAGTCAATTGGTGCTGCACCAATGAAACTCGGCCTTGATCTGCGTGGTGGTGTGCACTTCC TGATGGAAGTGGATATGGATGCCGCGATGGAAAAATTGGTCAGCCAACAAGAAGAAGCTTTCCGCAGTGATCTGCGTGAC GAGAAAATTCGTTACCGCGCGATCCGTCCATTATCGGATGCGGTTGAAGTGACCCTGCGTGATGCCGAGCAGCTTGCGCA AACTAAGCTGCTTCTGGAGTCGAAACACCGTGATATGACCTTTACGACTTCAGAATCCGATGGCCGTTTTGTGCTCGTGG CTAAGTTTACCGAAGCTCGCTTACAGGAAATTCGCAACTACGCCGTTGAGCAGAACATCACTATTTTGCGTAACCGGGTG AACGAACTGGGTGTGGCTGAGCCTCTGGTTCAACGCCAAGGTGCGACACGTATCGTGGTAGAGCTGCCGGGTGTACAAGA CACCGCGCGTGCTAAAGAAATCTTAGGCGCGACCGCAACCCTTGAGTTTCGTGAAGTGGACGATAAAGCCGACCTTGCCG CTGCGGCAGCAGGACGTGCGCCAGCTGGCAGCGAAATCAAGTTCGATCGTAATGGTCGTCCTGTAGTGCTGAAAAAGCGC GTGATTCTGGGTGGTTCAAGCATTACCGATGCAAGCTCAAGCGCCGACGAATATGGTCGCCCACAGGTGAACATTTCGCT CGATAGCGAAGGCGGCAACAAGATGTCAGCGTTCTCGAAAAAGAACATTGGCAAGTTGATGGCGACGGTATTTGCTGAAT ACAAAGACAGCGGTAAGCGCTCTCCTGAAGGTAAAGTCATTCTGACCAAGCATGAAGAAGTGATTAACCAAGCGACGATT CAGTCGGCATTGGGACGTAACTTCCGTATTACTGGGATTGATTCACCGGCAGAAGCGCATAACCTTGCTCTGCTATTGCG TGCCGGTGCTTTGATTGCGCCAATTTCTATCGTCGAAGAGCGCACCATTGGTCCATCAATGGGTCAGCAGAATATCGATA TGGGTATTCAGGCCTGTATTTGGGGTATGGTGGCGGTAATGCTGTTTACGGTTCTTTACTACCGTAAGTTTGGCATGATC GCTAACATCGCACTGATGGCGAACCTCGTGCTGATCATTGGCGTAATGTCGATGATCCCGGGCGCAACCATGACCTTGCC GGGTATTGCTGGTATCGTGTTGACGGTCGGTATGGCGGTCGATGCCAACGTACTGATTTTCGAGCGTATTCGTGAAGAGC TACGCGAAGGAAAAAATCCGCAGCAAGCGATTCATCAAGGTTACGCTAACGCATTCAGTACCATTGCCGATGCCAACATC ACCACCTTAATTACGGCGATCATTTTGTTTGCCGTTGGTACAGGGGCGATTAAAGGCTTCGCAGTGACGCTGTCTATCGG TATTTTAACCTCTATGTTTACCGCGATTGTGGGTACACGTTGTATCGTGAACCTGCTGTATGGCGGCAAACGTATCAACA AATTGTCGATCTGA Protein sequence : MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGASVDMSTLDAVTDALNKAQLSQKSIALENGSILVRFND TDTQISARDIISEALGKDKIVALNLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRD EKIRYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILRNRV NELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKR VILGGSSITDASSSADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATI QSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKFGMI ANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANI TTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 6e-118 | 50 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 5e-118 | 50 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 5e-118 | 50 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 5e-118 | 50 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-118 | 50 |
