Gene Information

Name : csoS1C (BBta_2647)
Accession : YP_001238696.1
Strain : Bradyrhizobium sp. BTAi1
Genome accession: NC_009485
Putative virulence/resistance : Virulence
Product : major carboxysome shell protein 1C
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4577
EC number : -
Position : 2739927 - 2740268 bp
Length : 342 bp
Strand : +
Note : Evidence: Function of strongly homologous gene

DNA sequence : 
ATGGCGACCGAGAAGATGGGAATTGCCTTGGGCATGATCGAAACGCGCGGCCTGGTGCCGGCGATCGAGGCGGCGGATGC
GATGACGAAGGCGTCCGAGGTGCGGCTGATCGGCCGTCAGTTCGTCGGCGGCGGCTATGTCACGGTGATGGTGCGCGGCG
AGACCGGTGCGGTCAACGCCGCAGTGCGGGCCGGCGCCGATGCCTGCGAGCGCGTCGGCGATGGCCTGGCTGCGGCGCAT
ATCATCGCCCGCCCGCATATCGAGGTCGAGCACGTGCTGCCGAAGCCCGGCATGACCCGCCTCGAGGACCAGAGCCTGGC
GCGCATTCCCGCGGCGGAATAG

Protein sequence : 
MATEKMGIALGMIETRGLVPAIEAADAMTKASEVRLIGRQFVGGGYVTVMVRGETGAVNAAVRAGADACERVGDGLAAAH
IIARPHIEVEHVLPKPGMTRLEDQSLARIPAAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 2e-11 56
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 5e-12 52
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 2e-11 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
csoS1C YP_001238696.1 major carboxysome shell protein 1C VFG1596 Protein 1e-11 56
csoS1C YP_001238696.1 major carboxysome shell protein 1C VFG1597 Protein 2e-12 52
csoS1C YP_001238696.1 major carboxysome shell protein 1C VFG1598 Protein 7e-12 48