Gene Information

Name : csoS1A (BBta_2648)
Accession : YP_001238697.1
Strain : Bradyrhizobium sp. BTAi1
Genome accession: NC_009485
Putative virulence/resistance : Virulence
Product : major carboxysome shell protein 1A
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4577
EC number : -
Position : 2740412 - 2740708 bp
Length : 297 bp
Strand : +
Note : Evidence: Function of strongly homologous gene

DNA sequence : 
ATGATCGAGACACGCGGACTGGTGCCGGCGATCGAGGCGGCGGATGCGATGACGAAGGCCTCCGAGGTGCGGCTGATCGG
CCGTCAGTTCGTCGGCGGCGGCTATGTCACGGTGATGGTGCGCGGCGAGACCGGGGCGGTCAATGCCGCGGTGCGGGCCG
GTGCCGATGCCTGCGAGCGCGTCGGCGATGGCTTGGCCGCGGCGCATATCATCGCTCGTCCGCACAGCGAGGTCGAGCAC
ATCCTGCCGCTTTATCCGCAAGGCGAGCTGCTGAGCGACGAAGTCGCCGCGCAATGA

Protein sequence : 
MIETRGLVPAIEAADAMTKASEVRLIGRQFVGGGYVTVMVRGETGAVNAAVRAGADACERVGDGLAAAHIIARPHSEVEH
ILPLYPQGELLSDEVAAQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 2e-10 56
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 3e-11 51
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 1e-09 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
csoS1A YP_001238697.1 major carboxysome shell protein 1A VFG1596 Protein 7e-11 56
csoS1A YP_001238697.1 major carboxysome shell protein 1A VFG1597 Protein 1e-11 51
csoS1A YP_001238697.1 major carboxysome shell protein 1A VFG1598 Protein 5e-10 47