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Name : Swit_3468 (Swit_3468) Accession : YP_001263952.1 Strain : Sphingomonas wittichii RW1 Genome accession: NC_009511 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 3809556 - 3813923 bp Length : 4368 bp Strand : - Note : TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2, domain 6; RNA polymerase Rpb2, domain 7; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 3 DNA sequence : ATGGCCACCCAGGCAGTTCCGGCGACCGCCAAGAAGCGCATCCGCAAGGTCTTCGGGAACATCCACGAAGTCGTCCAGAT GCCGAACCTGATCGAGGTTCAGCGCGAATCCTACGAGCAGTTCCTGCGGTCGCGCCCGGCCGACGGCTATGTCTCGGGCC TCGAAAAGACGCTCCGCTCGGTCTTCCCGATCCGCGACTTCGCCGGCACCGCCGAGCTCGACTTCGTCCAGTACGAGCTG GAGGACCCGAAGTACGACACCGACGAGTGCCGCCAGCGCGGCATGACCTATGCGGCGCCGATGCGCGTCACCCTGCGCCT GATCGTGTTCGAGGTCGATCCCGACACGGAGACCCGCTCGGTCCTCGATATCAAGGAGCAGGACGTCTACATGGGCGACA TGCCGCTCATGACCGAGAACGGCACCTTCCTGATCAACGGCACCGAACGCGTCATCGTGTCGCAGATGCACCGCTCGCCG GGCGTGCTGTTCGACCATGACCGCGGCAAGACCCATGCCTCGGGCAAATATCTGTTCGCCGCGCGCGTCATCCCCTATCG CGGCTCGTGGCTCGACTTCGAGTTCGACGCCAAGGACATCGTCAACGTCCGCATCGACCGCAAGCGCAAGCTGCCGGTCA CCTCGCTGCTGCGCGCGCTGGGCGACGCGGTGATCGAGGTCAATCCCGACAAGGGCAAGTTCGAGGCCGGCGACATCGTC GCCATCTCGGGCGTCAACCGCGCCTGCCGGGTCAAGGCGGTCGCGGGCAGGCTCGTCACCGTCGAGGACCCGACCGGCGC GATCATCCCGGGCGGCCTGATCCAGACCGCCGAGGGCGAGAAGATCGGCCATGTCGCGCGCATCCGCCTGCAGGGCATGT CGGGCGAGGACATCCTCAACTATTTCTACCGCACGCAGCGCTTCGTGCGCGGCGAGAACGGCTGGAAGGTCCCCTTCGTC GCCGAGAACTGGCGCGGCCAGAAGCCGGCGTTCGACGTCGTCAACGCCGACACCGGCGAGGTCGTCTTCCCGGCCGGCAC CAAGATCAGCCCCCGCGCCGCCAACAAGGCCGGCAAGGACGGGCTCGAGACGCTGCTGATCCCGACCGACCAGATCTTCG GCCGCTATTCGGCCTATGACCTGATCGACGAGTCGACCGGCCGCATCTACATCGAGGCCGGCGACGAGGTGACGCCGGAG AATCTGGAAGCGCTCGACAAGGCCGGCTTCGACCATGTCGACCTGCTCGACATCGACCATGTCTCGACCGGCCCGTGGAT CCGCAACACGCTGAAGGCCGACAAGGTCGAGGACCGCGACCATGCGCTGAGCGAGATCTATCGCGTCATGCGCCCCGGCG AGCCGCCGACGAAGGAGACCGCCGAGGCGCTGTTCGCCGGGCTGTTCTTCGACTCCGAGCGCTACGACCTGTCGGCCGTC GGCCGCGTCAAGCTCAACATGCGCCTCGAACTCGACGCCGAGGACACCGTCACCACCCTCCGCTCGGAGGACATATTGGC GGTGGTCAAGACGCTGGTCGACCTGAAGGACGGCAAGGGCGAGATCGACGACATCGACAATCTCGGCAACCGCCGCGTCC GTTCGGTCGGCGAGCTGCTGGAGAACCAGTATCGCGTCGGCCTGCTCCGCATGGAGCGCGCGGTGAAGGAGCGGATGTCG TCGGTCGACGTGTCGACGGCGATGCCGAACGACCTGATCAACGCCAAGCCGGCGGTGGCCGCGGTGCGCGAATTCTTCGG CTCGTCGCAGCTGTCGCAGTTCATGGACCAGACCAACCCGCTGTCGGAAGTCACCCACAAGCGCCGCGTCTCGGCGCTCG GGCCGGGCGGCCTCACCCGCGAGCGCGCGGGCTTCGAGGTCCGCGACGTCCATCCGACCCATTATGGCCGCATCTGCCCG ATCGAGACGCCGGAAGGACCGAACATCGGCCTGATCAACTCGCTGGCGAGCTTCAGCCGGGTCAACAAGTACGGCTTCAT CGAGACGCCGTACCGCAAGATCGTCGACGGCAAGGTGACCAACGAGGTCGTCTACCTGTCGGCGATGGAAGAGGCCAAGC ACACCATCGCGCAGGCGAACGCCGAGCTCGATAGCGAGGGCCGCTTCGTCGAGGACCTGATCTCCGCCCGCGAGGCCGGC GAGTTCCTGATGGCGCCGCGCGACCATGTCACGCTGATGGACGTCAGCCCCAAGCAGCTCGTCTCGGTCGCCGCGTCGCT GATCCCGTTCCTGGAGAATGACGACGCGAACCGCGCGCTGATGGGGTCGAACATGCAGCGCCAGGCGGTGCCGCTGGTCC GCGCCGAGGCGCCGTTCGTCGGCACCGGCATGGAAGAGACGGTCGCCCGCGATTCGGGCGCCGCGATCGCCGCCAAGCGC TCGGGCATCGTCGACCAGGTCGACGCGACCCGCATCGTGGTCCGCGCCACCGGCGCGGTCGACGCCGGCAAGTCGGGCGT CGACATCTACACGCTGATGAAGTTCCAGCGCTCGAACCAGTCGACCTGCATCAACCAGCGCCCGCTGGTGAAGGTGGGCG ACGTGGTCAACGCCGGCGACATCATCGCCGACGGCCCGTCGACCGAGTTCGGCGAGCTGGCGCTGGGCCGCAACGTCCTC GTCGCGTTCATGCCGTGGAACGGCTACAACTATGAGGACTCGATCCTGATCTCCGAGCGGATCGTGAAGGACGACGTCTT CACCTCGATCCACATCGACGAGTTCGAGGTGATGGCCCGCGACACCAAGCTCGGGCCGGAGGACATCACCCGCGACATCC CGAACGTCGGCGAGGAAGCGCTGCGCAACCTCGACGAGGCGGGCATCGTCTATATCGGCGCCGAGGTCGAGCCGGGCGAC ATCCTGTGCGGCAAGATCACGCCGAAGGGCGAGAGCCCGATGACGCCGGAGGAGAAGCTGCTCCGCGCCATCTTCGGCGA GAAGGCCTCCGACGTCCGCGACACCTCGCTGCGGCTGCCGCCGGGCGTGTCGGGCACCGTCGTCGACGTGCGCGTGTTCA ACCGCCACGGCATCGACAAGGACGAGCGCGCGATGGCGATCGAGCGCGAGGAGATCGACCGCCTGACCAAGGACCGCGAG GACGAGCGCGCCATCCTGAACCGCGCCAACTACGCGCGGCTCAAGGAGATGCTGCTCGGCCAGATCGCGACCGCGGCGCC GAAGGGCATCAAGAAGGGCTCCGAGATCAACGAGGAGCTGCTCGCCGAGGTCGAGAAGCGCGAATGGTGGAAGTTCGCGG TGCAGGACGACGCCCGCCAGGCGGACCTGGAGGCGGTCAAGGCCCAGTATGACGACGCCGTCGGCCTGATCGTCAAGAAG TTCGAGGACCGGGTCGAGAAGCTGCAGCGCGGCGACGAGCTGCCCCCGGGCGTGCTCAAGATGGTCAAGGTGTTCGTCGC GGTGAAGCGCAAGCTGCAGCCGGGCGACAAGATGGCCGGCCGCCACGGCAACAAGGGCGTGATCAGCCGCATCCTGCCGC AGGAGGACATGCCGTTCCTGGAGGACGGCACCCCCGTCGACATCGTGCTCAACCCGCTCGGCGTGCCGAGCCGCATGAAC GTCGGCCAGATCTTCGAGACGCACCTCGGCTGGGCCGCCCGCGGCCTGGGCAAGCAGGTGACGAGCGCCCTCGAAGCCTG GCGCGAGGCCAATCCCGACGCGCAGGCGGCGACCCCGCCGGCGGCGGTCGTCGACCGGCTGAAGGAGGTGTACGGCAAGG AATATCATGCCGACATCGAAGGCCGCTCGACCGACCAGATCGTCGAGATGGCGGGCCTGCTGAAGAACGGCGTGCCGATG GCGACGCCGGTGTTCGACGGCGCCCGCGAGGCCGACGTGGCCGAGATGCTGCGCCGCGCCGGGCTCGACGAGAGCGGCCA GGTGGAACTGTTCGACGGGCGCACCGGCGACCAGTTCGACCGCAAGGTGACGGTGGGCTACATCTACATGCTGAAGCTCC ACCACCTCGTCGACGACAAGATCCACGCGCGCTCGATCGGCCCGTACAGCCTGGTCACCCAGCAGCCGCTGGGCGGCAAG GCGCAGTTCGGCGGCCAGCGCTTCGGCGAGATGGAGGTGTGGGCGCTCCAGGCCTATGGCGCCGCCTACACGCTGCAGGA GATGCTGACGGTGAAGTCGGACGACGTGGTCGGCCGCACCAAGGTCTACGAGGCGATCGTCAAGGGCGACGACACCTTCG AGGCCGGCATCCCCGAGAGCTTCAACGTGCTCGTCAAGGAAATGCGGTCGCTCGGCCTCAACGTCGAGCTGTCCTCGATC GAGGACCAGTCCGACGACGACGACGGCCTGGCCGAAGCAGCGGAGTGA Protein sequence : MATQAVPATAKKRIRKVFGNIHEVVQMPNLIEVQRESYEQFLRSRPADGYVSGLEKTLRSVFPIRDFAGTAELDFVQYEL EDPKYDTDECRQRGMTYAAPMRVTLRLIVFEVDPDTETRSVLDIKEQDVYMGDMPLMTENGTFLINGTERVIVSQMHRSP GVLFDHDRGKTHASGKYLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTSLLRALGDAVIEVNPDKGKFEAGDIV AISGVNRACRVKAVAGRLVTVEDPTGAIIPGGLIQTAEGEKIGHVARIRLQGMSGEDILNYFYRTQRFVRGENGWKVPFV AENWRGQKPAFDVVNADTGEVVFPAGTKISPRAANKAGKDGLETLLIPTDQIFGRYSAYDLIDESTGRIYIEAGDEVTPE NLEALDKAGFDHVDLLDIDHVSTGPWIRNTLKADKVEDRDHALSEIYRVMRPGEPPTKETAEALFAGLFFDSERYDLSAV GRVKLNMRLELDAEDTVTTLRSEDILAVVKTLVDLKDGKGEIDDIDNLGNRRVRSVGELLENQYRVGLLRMERAVKERMS SVDVSTAMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICP IETPEGPNIGLINSLASFSRVNKYGFIETPYRKIVDGKVTNEVVYLSAMEEAKHTIAQANAELDSEGRFVEDLISAREAG EFLMAPRDHVTLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEETVARDSGAAIAAKR SGIVDQVDATRIVVRATGAVDAGKSGVDIYTLMKFQRSNQSTCINQRPLVKVGDVVNAGDIIADGPSTEFGELALGRNVL VAFMPWNGYNYEDSILISERIVKDDVFTSIHIDEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGD ILCGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTVVDVRVFNRHGIDKDERAMAIEREEIDRLTKDRE DERAILNRANYARLKEMLLGQIATAAPKGIKKGSEINEELLAEVEKREWWKFAVQDDARQADLEAVKAQYDDAVGLIVKK FEDRVEKLQRGDELPPGVLKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRILPQEDMPFLEDGTPVDIVLNPLGVPSRMN VGQIFETHLGWAARGLGKQVTSALEAWREANPDAQAATPPAAVVDRLKEVYGKEYHADIEGRSTDQIVEMAGLLKNGVPM ATPVFDGAREADVAEMLRRAGLDESGQVELFDGRTGDQFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGK AQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELSSI EDQSDDDDGLAEAAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 57 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Swit_3468 | YP_001263952.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 61 |
| Swit_3468 | YP_001263952.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 60 |
| Swit_3468 | YP_001263952.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 59 |
| Swit_3468 | YP_001263952.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 58 |
| Swit_3468 | YP_001263952.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 58 |
| Swit_3468 | YP_001263952.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 58 |
| Swit_3468 | YP_001263952.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 58 |
| Swit_3468 | YP_001263952.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 58 |
| Swit_3468 | YP_001263952.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 58 |
| Swit_3468 | YP_001263952.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 58 |
| Swit_3468 | YP_001263952.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 57 |
| Swit_3468 | YP_001263952.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 57 |
| Swit_3468 | YP_001263952.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 57 |
| Swit_3468 | YP_001263952.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 57 |
| Swit_3468 | YP_001263952.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 57 |
| Swit_3468 | YP_001263952.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 57 |
| Swit_3468 | YP_001263952.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 57 |
