Gene Information

Name : Pput_0181 (Pput_0181)
Accession : YP_001265540.1
Strain : Pseudomonas putida F1
Genome accession: NC_009512
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 193925 - 194446 bp
Length : 522 bp
Strand : -
Note : TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2

DNA sequence : 
ATGCCGGCGCCCTCCTCCATGCCCAGCAACGATTCCGTGCAAACGCTCTACAGTGACCACCACGGCTGGTTGCATACCTG
GCTGCGTAGCAAGCTCGGCAACGCAGCCGATGCGGCTGACCTCGCCCAAGATACCTTCGTCCGCTTGCTACAGCGTCGTG
AACAATTGCAGCTGAATGCTCCCAGGGCCTTCCTGCGCACGGTAGCGCGTGGGTTGGTGATCGATCATTGGCGCCGCGAG
GAACTGCACAGGGCCTACCTGGAGGCTTTGGCCCATGTGCCGGAAGCACTGGCCCCCTCAGTCGAGACCCGCGAGCTGCT
GCTGGAATTGCTTGAGCGTATTGCACGCATGCTCGACGGCCTCAAACCCAAGGTCCGTCGCGCATTCCTGCTGGCTCAAT
GCGAGGGGCTGAAGCATCAGGCCATCGCCGAACAGATGGGGATCTCCGTGCGCACCGTTGAGCGCTATATCGCCGATGCG
CTCTATCACTGCTACGTGCTGCGCTATGAAGACGACTGCTGA

Protein sequence : 
MPAPSSMPSNDSVQTLYSDHHGWLHTWLRSKLGNAADAADLAQDTFVRLLQRREQLQLNAPRAFLRTVARGLVIDHWRRE
ELHRAYLEALAHVPEALAPSVETRELLLELLERIARMLDGLKPKVRRAFLLAQCEGLKHQAIAEQMGISVRTVERYIADA
LYHCYVLRYEDDC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 2e-30 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pput_0181 YP_001265540.1 ECF subfamily RNA polymerase sigma-24 factor VFG1049 Protein 9e-31 45