|
Name : Pput_0378 (Pput_0378) Accession : YP_001265735.1 Strain : Pseudomonas putida F1 Genome accession: NC_009512 Putative virulence/resistance : Virulence Product : RNA polymerase sigma factor Function : - COG functional category : K : Transcription COG ID : COG1595 EC number : - Position : 438831 - 439349 bp Length : 519 bp Strand : - Note : Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate DNA sequence : TTGTCTTCTGCACAAAGCCCACACGCCGATCTGGTCGGTGCGCTGTACCGCGACCACCGCGGCTGGCTGCTCGCCTGGCT GCAACGCAGCATGGCCTGCCGCCAACGTGCCGAAGACCTGAGCCAGGACACCTTCGTGCGCCTGCTTGGTCGTGAGCAAC TGGAGACACCCCGCGAACCCCGCGCGTTTCTGGCCGCCGTGGCCAAGGGGCTGATGTTCGACCACTTCCGTCGCACCGCG CTGGAACAAGCCTACCTGGCCGAGCTGGCATTGATCCCTGAAGCCGAACAGCCGTCGCCAGAAATGCAGCACCTGATCCT TGAAGACCTCAAAGCCATCGACCGCCTGCTCGGCAAGCTGTCGAGCAAGGCTCGCGCGGCGTTTCTGCACAGCCGCCTGG ACGGCATGGGCCATGCCGAGATTGCCGAGCGCCTTGGCGTTTCGGTGTCGCGGGTGCGCCAGTACATCGCCCAAGGGATG CGCCAGTGCTATGTAGCCCTGTATGGGGAGCCGACGTGA Protein sequence : MSSAQSPHADLVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLETPREPRAFLAAVAKGLMFDHFRRTA LEQAYLAELALIPEAEQPSPEMQHLILEDLKAIDRLLGKLSSKARAAFLHSRLDGMGHAEIAERLGVSVSRVRQYIAQGM RQCYVALYGEPT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAL08458.1 | FecI | Virulence | SRL | Protein | 5e-29 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pput_0378 | YP_001265735.1 | RNA polymerase sigma factor | VFG1049 | Protein | 2e-29 | 47 |
