Gene Information

Name : Pput_5279 (Pput_5279)
Accession : YP_001270581.1
Strain : Pseudomonas putida F1
Genome accession: NC_009512
Putative virulence/resistance : Unknown
Product : LysR family transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG0583
EC number : -
Position : 5926657 - 5927574 bp
Length : 918 bp
Strand : +
Note : PFAM: regulatory protein, LysR; LysR, substrate-binding

DNA sequence : 
ATGCGATCTGTTGACGATACCGCGCCGGCCCTGCCACCCCTGAGAGCGATTCAGGCCTTTGAGCAAACCGCTCGCTTCGG
TAATGTTGCGCGCGCAGCGGAAGTGCTAGACCTCACCCCTTCGGCTGTCAGTCATCAATTGGCCAAGCTCGAAGCAATGA
TTGGTCGACAACTGTTCTTTCGCGCGGCGCGCGGCGTCAGCCTGACTCCCGTTGGCGAGCAGTATCTGAAAGACGTTTCC
GGCATTCTGCACAGTCTTTCCGTCGCCACAGAACGGGCCAGCAGCGACGTCAGCCTCGATTGTCTGCGTTTGCATTCGTC
ACCAAGTTTCGGCCTGCTCTGGCTAATGCCAAGGCTGGAAGCATTTCGGATGGCGCACCCGGATATCCAGATCAACTTGT
CGTGCTCCTATGAATCTCTGCATTTCAGTCGCGACAAGATTGACGTAGACATTCGCCATGGCGAACCCAATTGGCCTAGC
TACGAGGTGCGCACTTTAGGCAATGAGGCATTTGCCGTGCTGGCCTCACCGAAACTGCTGGCCCGGCATAGGATCGACGA
CGCGTCGGATCTACTGCGTCGGGACTTGATTCTCTCCGAGGCCACATTGCTGAAATGGCCGGCCTGGTTCGCTCGACACG
GCCTCGCCCGCCCGGAAAAGCCCTACGCGTTGAGCTTCGATCGTTCCTACATGTCCCTGGAGGCCGCCAGTCACGGGCTG
GGTTTTGCGCTCGAAAGCACGTTATTAGCGCAGAAGTACCTTGCGGCCGGAACACTGGTGGAAGTCGTGCCACACATCTT
CAGCGCGCCTGTGGCGGCCCATCATCTGGTATTCCCGAAAGCGCATTCCGGGTTCGAAAGGGTCAGGCGTTTCTTGGCGT
GGATGGAGAGAGAGCTCGGGCATGGCTTCGTGTTTTAA

Protein sequence : 
MRSVDDTAPALPPLRAIQAFEQTARFGNVARAAEVLDLTPSAVSHQLAKLEAMIGRQLFFRAARGVSLTPVGEQYLKDVS
GILHSLSVATERASSDVSLDCLRLHSSPSFGLLWLMPRLEAFRMAHPDIQINLSCSYESLHFSRDKIDVDIRHGEPNWPS
YEVRTLGNEAFAVLASPKLLARHRIDDASDLLRRDLILSEATLLKWPAWFARHGLARPEKPYALSFDRSYMSLEAASHGL
GFALESTLLAQKYLAAGTLVEVVPHIFSAPVAAHHLVFPKAHSGFERVRRFLAWMERELGHGFVF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAT96097.1 lysR family transcriptional regulator Not tested T-PAI Protein 8e-125 85
unnamed AAT96053.1 lysR family transcriptional regulator Not tested T-PAI Protein 7e-125 85
unnamed AAT96226.1 lysR family transcriptional regulator Not tested T-PAI Protein 7e-125 85
unnamed AAT96114.1 lysR family transcriptional regulator Not tested T-PAI Protein 3e-124 84
unnamed AAT96174.1 lysR family transcriptional regulator Not tested T-PAI Protein 2e-124 84